Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8D880 Cluster: Predicted protein-disulfide isomerase; ...    31   5.8  
UniRef50_A1ZRD8 Cluster: YadS protein; n=2; Flexibacteraceae|Rep...    31   5.8  
UniRef50_Q8I450 Cluster: Actin-related protein, putative; n=5; P...    31   5.8  
UniRef50_Q4AH23 Cluster: 3-oxoacyl-(Acyl-carrier-protein) syntha...    31   7.7  
UniRef50_A2YDV9 Cluster: Putative uncharacterized protein; n=12;...    31   7.7  

>UniRef50_Q8D880 Cluster: Predicted protein-disulfide isomerase;
           n=7; Vibrionales|Rep: Predicted protein-disulfide
           isomerase - Vibrio vulnificus
          Length = 209

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 64  IWHQIFLRLVINFNYY*WFSCLCVQ 138
           IWHQI  RL   FNY  W SC  V+
Sbjct: 62  IWHQIEQRLGTQFNYEFWTSCTPVR 86


>UniRef50_A1ZRD8 Cluster: YadS protein; n=2; Flexibacteraceae|Rep:
           YadS protein - Microscilla marina ATCC 23134
          Length = 205

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 271 VVNGCYPVGGCKNLLRLNGLCMPFLFSVVLHKYL 372
           ++ G YP+G  KN++ LN + + FL +++  +Y+
Sbjct: 50  LILGSYPLGWVKNIVYLNAIGIGFLCAILFRRYI 83


>UniRef50_Q8I450 Cluster: Actin-related protein, putative; n=5;
           Plasmodium|Rep: Actin-related protein, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 565

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 289 DNNHSQLATLQTKIHDLLHIKNRLNSSNN 203
           +NNH  L T++  + D+ +IKN LN  NN
Sbjct: 207 ENNHFDLDTIENNMVDVNNIKNMLNKYNN 235


>UniRef50_Q4AH23 Cluster: 3-oxoacyl-(Acyl-carrier-protein) synthase
           III; n=1; Chlorobium phaeobacteroides BS1|Rep:
           3-oxoacyl-(Acyl-carrier-protein) synthase III -
           Chlorobium phaeobacteroides BS1
          Length = 344

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 331 KDH*VLKGFYTHPQDNNHSQLATLQTKIHDLLHIKNRLN--SSNN 203
           +D  VL G   HP    ++ +A    KI D+ H+KNRLN  S NN
Sbjct: 199 RDAGVLYGGTCHPITAENADVAYKSLKIFDVEHMKNRLNDVSLNN 243


>UniRef50_A2YDV9 Cluster: Putative uncharacterized protein; n=12;
            Oryza sativa|Rep: Putative uncharacterized protein -
            Oryza sativa subsp. indica (Rice)
          Length = 1514

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 235  EANHVFWFEGLPVVNGCYPVGGCKNLLRLNGL 330
            EA  +   E LP ++GC  +GGC+ L R++ L
Sbjct: 933  EAECLKTVEDLPFLSGCLSIGGCEGLERVSNL 964


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,676,557
Number of Sequences: 1657284
Number of extensions: 7377009
Number of successful extensions: 13954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13940
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)