Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.1  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   2.4  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   3.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   3.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   4.3  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   5.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   5.6  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    20   7.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 91   LVLEISGAI*FTANIWHSHLISKR 20
            +++ +SG I FT  IW   LI ++
Sbjct: 1158 IIMILSGCIIFTEGIWICSLIHRK 1181


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 244 HVFWFEGLPVVNGCYPVG--GCKN 309
           HVF+F     + G YPVG  G KN
Sbjct: 119 HVFFFTLFNKLLGQYPVGIVGVKN 142


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 312 KVFTPTHRITTIHN-WQPFKPKYMIC 238
           K +  TH   T+HN +   KP Y IC
Sbjct: 8   KSYFTTHH-DTLHNIYTSMKPVYAIC 32


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 312 KVFTPTHRITTIHN-WQPFKPKYMIC 238
           K +  TH   T+HN +   KP Y IC
Sbjct: 8   KSYFTTHH-DTLHNIYTSMKPVYAIC 32


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 IHDLLHIKNRLNSSNN 203
           IH+LL  KN  N+ NN
Sbjct: 217 IHNLLSDKNPPNTENN 232


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 193 VSMGCYYCSTYFLCEANH 246
           +S GC  C  +   E+NH
Sbjct: 32  ISQGCKACGYHSPLESNH 49


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 25  WILDVNAKCSL*IIWHQIF 81
           W+ D N  CS  I W +++
Sbjct: 481 WVTDGNNWCSPYIGWQKVY 499


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 130 CVQCLALIVKY*VFTG*VVWGVSMGCYYCSTYFLC 234
           C++   +I++Y         G+ +  ++CS   LC
Sbjct: 231 CIEQYNVILRYTKIVSDTYQGILVVQFFCSLVALC 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,837
Number of Sequences: 336
Number of extensions: 2249
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)