Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.34 
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   1.4  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   1.8  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   7.2  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.6  

>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 16  IIFWILDVNAKCSL*IIWHQI 78
           +IFWI+D  +  S+ + WH+I
Sbjct: 209 LIFWIIDQQSSSSIEVCWHRI 229


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 362 WRTTENKKGIQRPLSLKRFLHPPTG*QPF 276
           +R TE  +G  RP SLK   +  TG +PF
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPF 496


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 301 CKNLLRLNGLCMPFLFSVVLHKY 369
           C+ LL LN  C P     ++H+Y
Sbjct: 538 CQKLLALNPFCRPSAHETLMHEY 560


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 182 LCGESAWVVTTVQPIFYVKQIMYFGL 259
           +CG  A  V + QP   +K ++ FG+
Sbjct: 184 ICGVIAGAVNSTQPAHQLKNMVIFGI 209


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 377 DYKYLWRTTENKKGIQRPLSLKRFLH 300
           D + LW T  N    Q+P +LK  LH
Sbjct: 164 DMQRLWLTAMNTYENQKPPNLKLLLH 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,496
Number of Sequences: 5004
Number of extensions: 33182
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)