Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0055 + 476204-476388,476481-476543,476684-476800,476920-47...    29   0.97 
07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575     26   9.1  
03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561...    26   9.1  

>06_01_0055 +
           476204-476388,476481-476543,476684-476800,476920-477328,
           477448-477638,477706-477871
          Length = 376

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 SAWVVTTVQPIFYVKQIMYFGLKGCQL*MVVILW 295
           S W+V T    F++  I+Y G+ GC L  V++ W
Sbjct: 242 SVWIVRTK---FHILTILYAGVVGCGLSFVLLTW 272


>07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575
          Length = 478

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 250 FWFEGLPVVNGCYPVGGCKNLLRLNGLCMP 339
           ++  GLP+V+G Y    C   L L  LC P
Sbjct: 310 YYSGGLPIVSGMYASSECFFGLNLRPLCGP 339


>03_06_0440 -
           33954726-33954809,33955141-33955475,33955929-33956106,
           33956205-33956285,33956629-33956740,33956831-33956931,
           33957001-33957174,33957313-33957486,33957683-33957765,
           33957852-33957912,33958069-33958251,33959630-33959848
          Length = 594

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 PVVNGCYPVGGCKNLLRLNGLC 333
           P+V G  P+   K  LR+ G C
Sbjct: 216 PIVPGIMPINNYKGFLRMTGFC 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,270,359
Number of Sequences: 37544
Number of extensions: 191899
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)