Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         27   4.0  
SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)          27   5.3  
SB_36015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           27   7.1  
SB_19521| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    26   9.3  

>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +1

Query: 154  VKY*VFTG*VVWG---VSMGCYYCST--YFLCEANHVFWFEGLPVVNG 282
            +KY V  G  +W    +S G Y   +  Y + +ANH+FW   LP  NG
Sbjct: 1033 MKYVVAVGLFIWVGQFISTGYYVWKSNGYIMGKANHLFW---LPSYNG 1077


>SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)
          Length = 594

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 259 EGLPVVNGCY-PVGGCKNLLRLNGLCMP 339
           E +PV NGCY P+   +N+L ++G C+P
Sbjct: 182 ETIPVDNGCYQPIVTKENVLVIHG-CLP 208


>SB_36015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 211 YCSTYFLCEANHVFWFEGLPVV 276
           YC  ++L ++  ++W  G PVV
Sbjct: 108 YCLQFYLHKSGEIYWLVGKPVV 129


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 355 QQRTRKAYKDH*VLKGFYTHPQDNNHSQLATLQTKIHDL 239
           ++R  K +  + ++    T   D+N +Q+  L+TK+HDL
Sbjct: 141 EERKNKVHDQNTIVHDLNTEVHDHN-TQVHDLKTKVHDL 178


>SB_19521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 259 EGLPVVNGCY-PVGGCKNLLRLNGLCMP 339
           E +PV NGCY P+    N+L ++G C+P
Sbjct: 138 ETIPVDNGCYQPIVTKANVLVIHG-CLP 164


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 12  NHNLLDI-RCECQMFAVNYMAPDI 80
           N+N  D+  C CQ+ A+NY  P I
Sbjct: 185 NYNPQDMWNCGCQLVALNYQTPGI 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,900
Number of Sequences: 59808
Number of extensions: 245582
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)