Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC067297-1|AAH67297.1|  665|Homo sapiens TTC25 protein protein.        29   6.9  
BC025390-1|AAH25390.1|  292|Homo sapiens TTC25 protein protein.        29   6.9  
AK055498-1|BAB70936.1|  672|Homo sapiens protein ( Homo sapiens ...    29   6.9  

>BC067297-1|AAH67297.1|  665|Homo sapiens TTC25 protein protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 377 DYKYLWRTTENKKGIQRPLSLKRFLHPPTG 288
           D  +L +  EN K  Q+P  +K  LHP  G
Sbjct: 144 DLSFLSKQAENIKAQQKPQPMKHLLHPTKG 173


>BC025390-1|AAH25390.1|  292|Homo sapiens TTC25 protein protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 377 DYKYLWRTTENKKGIQRPLSLKRFLHPPTG 288
           D  +L +  EN K  Q+P  +K  LHP  G
Sbjct: 144 DLSFLSKQAENIKAQQKPQPMKHLLHPTKG 173


>AK055498-1|BAB70936.1|  672|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30936 fis, clone FEBRA2007200, weakly similar to
           MYOSIN II HEAVY CHAIN, NON MUSCLE. ).
          Length = 672

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 377 DYKYLWRTTENKKGIQRPLSLKRFLHPPTG 288
           D  +L +  EN K  Q+P  +K  LHP  G
Sbjct: 144 DLSFLSKQAENIKAQQKPQPMKHLLHPTKG 173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,277,762
Number of Sequences: 237096
Number of extensions: 1225255
Number of successful extensions: 9206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9206
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)