Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1938|AAF52997.2|  326|Drosophila melanogaster CG6431-PA...    30   1.2  
AY119186-1|AAM51046.1|  574|Drosophila melanogaster SD10846p pro...    29   1.6  
AE014297-971|AAF54403.1|  574|Drosophila melanogaster CG8228-PA ...    29   1.6  

>AE014134-1938|AAF52997.2|  326|Drosophila melanogaster CG6431-PA
           protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 256 FEGLPVVNGCYPVGGCKNLLRLNGLCMPFLFSVVLHKY 369
           F G+P  NGC  + G K  L ++G   PF F+ ++ +Y
Sbjct: 281 FMGVPCPNGCLNLSGSKR-LPVSGKVNPFEFASLIREY 317


>AY119186-1|AAM51046.1|  574|Drosophila melanogaster SD10846p
           protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 265 TLQTKIHDLLHIK-NRLNSSNNP 200
           T Q  +H+LLHIK NRL+ SN P
Sbjct: 235 TYQAMVHELLHIKNNRLDLSNCP 257


>AE014297-971|AAF54403.1|  574|Drosophila melanogaster CG8228-PA
           protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 265 TLQTKIHDLLHIK-NRLNSSNNP 200
           T Q  +H+LLHIK NRL+ SN P
Sbjct: 235 TYQAMVHELLHIKNNRLDLSNCP 257


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,445
Number of Sequences: 53049
Number of extensions: 364991
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)