Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1273
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    29   0.86 
Z82264-8|CAB05153.1|  706|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 235 EANHVFWFEGLPVV----NGCYPVGGCKNLLRLNGLCMPFLFSVVLHKYL 372
           E +H+ WF GLP         + +G    L   N   +PF F + L+KYL
Sbjct: 735 EESHLVWFSGLPSEFCDREQFHQLGRLVGLSIYNHSIVPFPFPLALYKYL 784


>Z82264-8|CAB05153.1|  706|Caenorhabditis elegans Hypothetical
           protein C49C3.1 protein.
          Length = 706

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 248 YFGLKGCQL*MVVILWVGV 304
           +FG+  C L +V+ILW GV
Sbjct: 261 FFGMNACWLIVVLILWKGV 279


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 354 NREQERHTKTIES*KVFTPTHRITTIHNWQPFKPKY 247
           +R  E H   +++ KVFT    I    NW+ F  ++
Sbjct: 50  HRRAEEHGIDLKTKKVFTVEESIQVFENWRKFATEH 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,298,085
Number of Sequences: 27780
Number of extensions: 191378
Number of successful extensions: 353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)