Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1271
         (606 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.004
UniRef50_Q11V53 Cluster: Aminopeptidase N; n=1; Cytophaga hutchi...    33   6.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 290 WVDELTAHLVLSGYWSP 340
           WVDELTAHLVLSGYWSP
Sbjct: 159 WVDELTAHLVLSGYWSP 175


>UniRef50_Q11V53 Cluster: Aminopeptidase N; n=1; Cytophaga
           hutchinsonii ATCC 33406|Rep: Aminopeptidase N -
           Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 1079

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 58  PRVDYFEFDIHYLLDITHS*ILI*FFPIVSSIPVSVLWNDSQTEC--IHFHVFK 213
           PR DY++ D+HY +D T    L     I  +    V WN+S  E   ++FH+F+
Sbjct: 47  PRADYWQQDVHYTIDATLDDSL---NTITGNSYRLVYWNNSPDELKELYFHLFQ 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,434,044
Number of Sequences: 1657284
Number of extensions: 12210315
Number of successful extensions: 23064
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23063
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)