Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1271
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.86 
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   6.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 494 RTSGYHYPAYFCREEVIFFR 435
           R SGYHY A  C     FFR
Sbjct: 194 RASGYHYNALTCEGCKGFFR 213


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 441 KNYFFTAEIGGVVVPTRADLREVLP 515
           KNYF      G   P   +L+ VLP
Sbjct: 39  KNYFNCIMDRGACTPDADELKRVLP 63


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 494 RTSGYHYPAYFCREEVIFFR 435
           R SG HY  Y C     FF+
Sbjct: 92  RASGKHYGVYSCEGCKGFFK 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,970
Number of Sequences: 336
Number of extensions: 3335
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)