Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1271
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209...    29   3.8  
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946...    28   6.6  

>01_06_0790 +
           32019972-32020101,32020461-32020657,32020790-32020993,
           32021444-32021645,32021798-32021886,32022567-32022662,
           32022710-32022814,32023516-32023556,32023685-32023777,
           32023853-32023970,32024488-32024578,32024693-32024766,
           32025008-32025187,32025643-32025681
          Length = 552

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -1

Query: 282 NKKIKKNSRITIYASFLPVSFLLFKNMKMDAFGL 181
           N   K +  ITIYA  LPV  LL      D FGL
Sbjct: 296 NNGSKNDEAITIYAKLLPVLKLLEALWLFDTFGL 329


>08_02_0405 +
           16790720-16791691,16792064-16792135,16794487-16794621,
           16794630-16794758
          Length = 435

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 573 CITASCQK*DK-NAYPCGLTLVGPLVSPHEWVPLP 472
           C  A+C       A PCG  +V P   P  W+ LP
Sbjct: 53  CFRAACHHWRSCTASPCGRGVVDPRFHPRRWMMLP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,909
Number of Sequences: 37544
Number of extensions: 334012
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)