Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1271
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)               29   2.2  
SB_22780| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  

>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
          Length = 828

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 440 KKLLLHGRNRRGSG-THSCGLTRGPTNVSPHG 532
           KKLLLH +N++  G T S  L R  T   PHG
Sbjct: 429 KKLLLHSKNQKKCGTTRSRRLKRCKTFAMPHG 460


>SB_22780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 304 HSPPG-VKWLLEPINIYNVNAPPILRYEF*GFSIVTTAAPPFKPKRKKITSSRQ 462
           HSP   VKW L  + + +++     R E  G++++   A  F+  RK++ S+R+
Sbjct: 163 HSPDAFVKWPLLFVEVMSLDRWERHRTEGYGYTVIPNKADAFQRARKRMISARE 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,299
Number of Sequences: 59808
Number of extensions: 392225
Number of successful extensions: 705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)