Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1271
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 494 RTSGYHYPAYFCREEVIFFR 435
           R SGYHY A  C     FFR
Sbjct: 193 RASGYHYNALTCEGCKGFFR 212


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 411 RCNYTETLELISQDGW 364
           RCN T     I  DGW
Sbjct: 363 RCNATGAFSWIGSDGW 378


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 411 RCNYTETLELISQDGWCIYVVYVYGLQ 331
           R N ++  + ++ DGW   +  V GL+
Sbjct: 218 RSNLSQPFQWLASDGWGRQIKLVEGLE 244


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 411 RCNYTETLELISQDGWCIYVVYVYGLQ 331
           R N ++  + ++ DGW   +  V GL+
Sbjct: 308 RSNLSQPFQWLASDGWGRQIKLVEGLE 334


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 494 RTSGYHYPAYFCREEVIFFR 435
           R SG HY  Y C     FF+
Sbjct: 116 RASGKHYGVYSCEGCKGFFK 135


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 494 RTSGYHYPAYFCREEVIFFR 435
           R SG HY  Y C     FF+
Sbjct: 116 RASGKHYGVYSCEGCKGFFK 135


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 494 RTSGYHYPAYFCREEVIFFR 435
           + SG+HY  + C     FFR
Sbjct: 73  KASGFHYGVHSCEGCKGFFR 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,236
Number of Sequences: 438
Number of extensions: 4009
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)