Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1270
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7Q1N2 Cluster: Chromosome chr7 scaffold_44, whole geno...    37   0.52 
UniRef50_Q248A3 Cluster: Cyclic nucleotide-binding domain contai...    33   4.8  

>UniRef50_A7Q1N2 Cluster: Chromosome chr7 scaffold_44, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_44, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 419

 Score = 36.7 bits (81), Expect = 0.52
 Identities = 24/70 (34%), Positives = 35/70 (50%)
 Frame = +1

Query: 451 KFVKSSLLVDKNPKKYSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVISVIGWLWSL 630
           K  K +L  DK P + S  ++ + K+ S  N+ K    E    +IA N  +S   WL S 
Sbjct: 243 KLQKENLTSDKEPPRLSFSMEPNFKQSSFSNKSKINEPENLNQEIAVNASLST--WLVSS 300

Query: 631 QSGSTNKTKP 660
           ++  TNKT P
Sbjct: 301 ETTPTNKTSP 310


>UniRef50_Q248A3 Cluster: Cyclic nucleotide-binding domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Cyclic nucleotide-binding domain containing
           protein - Tetrahymena thermophila SB210
          Length = 959

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +1

Query: 148 ENSFILIQQIDVSAEILDN*RTNTFGSV*YRSRLLGTLDFIEIHSYVV*ISNIGRTK 318
           ENS+   Q   +   I +N +TN F +V   SR  GTL  I+I+ Y++ I N   T+
Sbjct: 392 ENSYFDQQNQQLEQFIFENQKTNRFSTVTCDSREGGTLIRIKINDYLLRILNYSETR 448


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,778,255
Number of Sequences: 1657284
Number of extensions: 10940486
Number of successful extensions: 23136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23134
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)