Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1270
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    24   1.00 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.00 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   3.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.3  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 27  EVYYKVYKINSRSI*TIYNVSRLTQRRYRLNIIRV 131
           E+YY  +   + S   I N+ RL  RR+ +  +R+
Sbjct: 264 ELYYLSHVCQNVSTEVIGNILRLMHRRFEITALRL 298


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 77  YSLYTSTVYFIYFIIDF*ALLNCVY 3
           Y +Y  TVY+IY+ +   +++N  Y
Sbjct: 149 YFIYLFTVYYIYYSVHEASIINFGY 173


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 520 HKRKSVFNEGKEF*AELTLGKIAKNMVIS 606
           H+   ++NE  EF  E  LG    +MVIS
Sbjct: 326 HEVTEIYNENGEFTYENILGMKYLDMVIS 354


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 132 ILVLCLDDIFVALIVTH 82
           ILVLCL  + + L V H
Sbjct: 5   ILVLCLATLALGLFVPH 21


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 74  SLYTSTVYFIYFIIDF*ALL 15
           +LY  T+ F++FII    LL
Sbjct: 235 ALYFLTIIFLFFIIPLIILL 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,386
Number of Sequences: 336
Number of extensions: 3048
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)