BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1270 (678 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 28 1.1 SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 2.5 SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 4.4 SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 5.8 SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 5.8 SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 5.8 >SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 923 Score = 28.3 bits (60), Expect = 1.1 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -2 Query: 245 LDRYHTDPNVFVR*LSRISADTSIC 171 L+RYH N+F++ L + S+C Sbjct: 706 LERYHASANIFIQMLRKTDVSNSVC 730 >SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 642 Score = 27.1 bits (57), Expect = 2.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 478 LPIRNFSQIYFIVIN*TSMGNITPTHFQEGTVILFVGAI 362 LPI+ S + F++I+ T +G T FQ + +GA+ Sbjct: 342 LPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDKIGAV 380 >SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 274 Score = 26.2 bits (55), Expect = 4.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 457 VKSSLLVDKNPKKYSCDLKKSHKRKSV 537 ++ L + K+ DL+KSHKRKSV Sbjct: 138 IEEGELTSEEEKEPIQDLRKSHKRKSV 164 >SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosaccharomyces pombe|chr 3|||Manual Length = 343 Score = 25.8 bits (54), Expect = 5.8 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = -2 Query: 542 LKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLDID 423 L+ +R+WD S + F S+ ++ +F K D+D Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLD 237 >SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 25.8 bits (54), Expect = 5.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 518 DFLRSQEYFFGFLSTNKELFTNLFHSN 438 +FLR E + S NKEL +NL S+ Sbjct: 681 EFLRKMEVYNNQFSKNKELCSNLLSSS 707 >SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1428 Score = 25.8 bits (54), Expect = 5.8 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = -3 Query: 274 FQ*NQEYLIVLIDIIRIQMCLYVSCQEFQQIRLSVG*E*NYFLDHSRHTRIMFRR 110 F +Y+ V + ++R+Q+ + +EF + L + + +L S+ I+FR+ Sbjct: 296 FDLTSQYVKVKLKMLRLQIANKKNSEEFSTLNLQLESITSQYLFSSKEAEIVFRK 350 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,553,547 Number of Sequences: 5004 Number of extensions: 51344 Number of successful extensions: 128 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 128 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 311890690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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