Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1270
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.5  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   4.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   5.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   5.8  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   5.8  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 245 LDRYHTDPNVFVR*LSRISADTSIC 171
           L+RYH   N+F++ L +     S+C
Sbjct: 706 LERYHASANIFIQMLRKTDVSNSVC 730


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 478 LPIRNFSQIYFIVIN*TSMGNITPTHFQEGTVILFVGAI 362
           LPI+  S + F++I+ T +G    T FQ    +  +GA+
Sbjct: 342 LPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDKIGAV 380


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 457 VKSSLLVDKNPKKYSCDLKKSHKRKSV 537
           ++   L  +  K+   DL+KSHKRKSV
Sbjct: 138 IEEGELTSEEEKEPIQDLRKSHKRKSV 164


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 542 LKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLDID 423
           L+  +R+WD   S +    F S+  ++   +F   K D+D
Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLD 237


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 518 DFLRSQEYFFGFLSTNKELFTNLFHSN 438
           +FLR  E +    S NKEL +NL  S+
Sbjct: 681 EFLRKMEVYNNQFSKNKELCSNLLSSS 707


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 274 FQ*NQEYLIVLIDIIRIQMCLYVSCQEFQQIRLSVG*E*NYFLDHSRHTRIMFRR 110
           F    +Y+ V + ++R+Q+    + +EF  + L +    + +L  S+   I+FR+
Sbjct: 296 FDLTSQYVKVKLKMLRLQIANKKNSEEFSTLNLQLESITSQYLFSSKEAEIVFRK 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,547
Number of Sequences: 5004
Number of extensions: 51344
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)