Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1270
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33200.1 68415.m04067 F-box family protein contains F-box dom...    29   3.7  
At5g54540.1 68418.m06790 expressed protein                             27   8.6  
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id...    27   8.6  

>At2g33200.1 68415.m04067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 228 GSKCVCTLVVKNFSRYVYLLDENKTIF 148
           G+KCV   + K++  YVY LD +  IF
Sbjct: 188 GTKCVSMALNKDYKLYVYALDNSIKIF 214


>At5g54540.1 68418.m06790 expressed protein
          Length = 297

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -2

Query: 590 FAIFPNVSSA*NSLPSLKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLD 429
           FA     ++A   + S+ +D ++WD +   +    FL TNK   ++   S+  D
Sbjct: 159 FAFLSENTAAQTVVASIASDPKVWDAVMENKDLMKFLQTNKTAVSSQVESDNDD 212


>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
           identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
          Length = 485

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 658 VWFYW*NLTVNSIASLLLI*PY-FSQFSLMS 569
           VW  W +   N +A +LL  PY FSQ  ++S
Sbjct: 48  VWDAWFSCASNQVAQVLLTLPYSFSQLGMLS 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,183
Number of Sequences: 28952
Number of extensions: 241151
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)