Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1269
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   1.4  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    22   4.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.4  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 464 QTREGHHVDRQLAQVGVQL 408
           Q R+ H VD QL Q+G  L
Sbjct: 28  QMRQVHEVDNQLKQMGCDL 46


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 6   ELVDAVLDVVRKECENCDCLQ 68
           ++  A+ +++ K CE CD  Q
Sbjct: 51  QIKGALPEIIGKNCERCDSRQ 71


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 179 SSPLAQSIRHRRRTIQRSSLHPS 247
           SSP  + I    R+ + +SLHPS
Sbjct: 154 SSPFDKLIEEDSRSNEDTSLHPS 176


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 179 SSPLAQSIRHRRRTIQRSSLHPS 247
           SSP  + I    R+ + +SLHPS
Sbjct: 102 SSPFDKLIEEDSRSNEDTSLHPS 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 179 SSPLAQSIRHRRRTIQRSSLHPS 247
           SSP  + I    R+ + +SLHPS
Sbjct: 285 SSPFDKLIEEDSRSNEDTSLHPS 307


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 158 QNHEHILSSPLAQSIRHRRRTIQRSSLHPSTSREYRRN 271
           ++HE  +  P   S   R RT   SS      RE+ R+
Sbjct: 70  RSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRS 107


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 489 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHG 599
           P ++ GS       + +L ++ FD+++   +  P HG
Sbjct: 718 PESNNGSSPSVLNAIEKLIEKSFDSRSRQNSSFPGHG 754


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 158 QNHEHILSSPLAQSIRHRRRTIQRSSLHPSTSREYRRN 271
           ++HE  +  P   S   R RT   SS      RE+ R+
Sbjct: 90  RSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRS 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,716
Number of Sequences: 336
Number of extensions: 2924
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)