Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1269
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 325 4e-90
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 187 2e-48
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 180 2e-46
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 137 1e-33
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 1.1
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 28 1.5
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.4
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 27 3.4
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 6.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.0
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 325 bits (798), Expect = 4e-90
Identities = 154/224 (68%), Positives = 177/224 (79%)
Frame = +3
Query: 3 AELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSV 182
AEL DAVLDVVR+E E CD LQGFQ KIREEYPDR+M T+SV
Sbjct: 110 AELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSV 169
Query: 183 VPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLV 362
P+PK SDTVVEPYNA LS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLV
Sbjct: 170 APAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLV 229
Query: 363 SLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPEL 542
S M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPEL
Sbjct: 230 SAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPEL 289
Query: 543 TQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSI 674
TQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ S+
Sbjct: 290 TQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSV 333
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 187 bits (455), Expect = 2e-48
Identities = 85/223 (38%), Positives = 132/223 (59%)
Frame = +3
Query: 6 ELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVV 185
E++D+VL+ +R+ +NC LQGF ++ EY + +SV
Sbjct: 117 EMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVY 176
Query: 186 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 365
P+P+VS +VVEPYN+VL+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIA 236
Query: 366 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 545
+S +T LRF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 546 QQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSI 674
Q F+ N M CDPR GRY+ ++RG + ++V + SI
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSI 339
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 180 bits (438), Expect = 2e-46
Identities = 84/223 (37%), Positives = 128/223 (57%)
Frame = +3
Query: 6 ELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVV 185
ELVD V D +R+ +NC LQGF ++ EY + +SV
Sbjct: 113 ELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVY 172
Query: 186 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 365
P+P+VS +VVEPYN+VL+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIA 232
Query: 366 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 545
+S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 546 QQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSI 674
Q F+ N M CDPR GRY+ ++RG + ++V + +I
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTI 335
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 137 bits (332), Expect = 1e-33
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Frame = +3
Query: 9 LVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 188
+ + ++D++ +E + D L+GF ++ + YP +I+ TYSV P
Sbjct: 114 IFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173
Query: 189 -SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 365
S VSD VV+PYN++L++ +L N D +DN AL I L NPT+ N LVS
Sbjct: 174 NSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVS 233
Query: 366 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVP 536
MS TT LR+PG +N DL + +++P PR HF + + P T++ ++ +A+ TV
Sbjct: 234 TVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVL 293
Query: 537 ELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLSI 674
++ +++ KN M + +P + ++++ I +G +V + +L I
Sbjct: 294 DVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 177 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 329
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -1
Query: 544 VSSGTVSARYCWLPRDVSGAKPGMKKCRRGKGTMLTASLRRSAFSCPGNRRHVVTPDMV 368
++ G + R C + A+ K+ +GK T++ + + P RRH+ D+V
Sbjct: 350 IAYGGIPMRVCHSDSTLCDARIAAKQALKGKRQYDTSTSKAELSTPPSKRRHIDDADLV 408
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 246 QLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 425
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 426 RKLAVNMV 449
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 60 NRSSHTPCGLHQGRRRRAQR 1
+R H P G H GR RRA R
Sbjct: 50 SRMDHRPDGYHDGRGRRAYR 69
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -1
Query: 628 RKMAATVR*RPWRGSQAAIMFLASNICCVSSGTVSARYCWLPRDVSGAKPGMK 470
++MA+ R + A F A I CV + R W+ + G GM+
Sbjct: 496 KRMASLTNSREMQIQHAPTTFAAETIQCVLPIRIEKRVVWMEDGMEGGMEGMQ 548
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 261 TDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 365
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 601 RPWRGSQAAIMFLASNICCVSSGTVS-ARYCWLPRDVSGAKPGMKK 467
+P SQ A + S + C+ S Y ++PR G+KP K+
Sbjct: 550 KPTGASQWAAVACTSVVSCIIMAAASLCEYLFVPRRFPGSKPIWKR 595
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 177 SVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDI 305
SV SPK + Y AV +IH++ +T + E LY I
Sbjct: 272 SVYESPKFYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAI 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,354
Number of Sequences: 5004
Number of extensions: 45297
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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