Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1268
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   3.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   3.8  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   6.7  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 640 CERRSASACGRHSLPPD 590
           CE  SA  CG H   PD
Sbjct: 104 CEMPSAGLCGSHDEIPD 120


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 640 CERRSASACGRHSLPPD 590
           CE  SA  CG H   PD
Sbjct: 52  CEMPSAGLCGSHDEIPD 68


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 640 CERRSASACGRHSLPPD 590
           CE  SA  CG H   PD
Sbjct: 235 CEMPSAGLCGSHDEIPD 251


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 291 IMLVYDVTNEKSFENIKNWIRNIEE 365
           IML+    ++KSF+N  N +  ++E
Sbjct: 96  IMLIISFMHKKSFKNFVNNVAALDE 120


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 223 ICNLTFLPSRSIVRILKSIPIVDIKEML 140
           +C LT L  +   ++L  IP+     ML
Sbjct: 299 VCELTILEYKRTKKLLYRIPVTKTDSML 326


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 223 ICNLTFLPSRSIVRILKSIPIVDIKEML 140
           +C LT L  +   ++L  IP+     ML
Sbjct: 124 VCELTILEYKRTKKLLYRIPVTKTDSML 151


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 486 PQILSDILWLIVHLAPLI 433
           P IL  + W+++HL  L+
Sbjct: 300 PFILLQVAWIVLHLIRLM 317


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = -2

Query: 418 SKSHLFPSIIFSTSALAFSSMFLIQFLMFSKLFSF 314
           SKS     + F T+ +   ++++   L+F+ L ++
Sbjct: 268 SKSRNIEGVSFGTNLVILCALWITTLLLFTILLAY 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,816
Number of Sequences: 336
Number of extensions: 3060
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)