Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1268
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           143   4e-36
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    71   2e-14
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    38   4e-04
X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein...    29   0.13 
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    28   0.22 
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   2.7  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   4.8  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  143 bits (347), Expect = 4e-36
 Identities = 66/163 (40%), Positives = 103/163 (63%)
 Frame = +3

Query: 60  CLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAG 239
           C FKL+L+G+S VGK+S++ RF +  F+    STIG  F  +T+ +D   VK +IWDTAG
Sbjct: 23  CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAG 82

Query: 240 QERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLD 419
           QER+ ++   YYRG+   ++VYD+ N  SF   K W++ ++  AS ++   + GNK DL 
Sbjct: 83  QERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLA 142

Query: 420 SQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDI 548
           + R V  E  +Q A + ++ F+ETSAK ++NV   F  +A+ +
Sbjct: 143 NSRVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 71.3 bits (167), Expect = 2e-14
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
 Frame = +3

Query: 69  KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 248
           K +++GD  VGKT +L  ++ D+F   ++ T   ++    + +DG +V L +WDTAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 249 FRTITTAYYRGSMGIMLVYDVTNEKSFENI-KNWIRNIEENASADVEKMILGNKCDLDSQ 425
           +  +    Y  +   ++ Y V +  SFEN+   W   I+ +   D   +++G K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVGTKIDLRED 125

Query: 426 RQ------------VSKERGEQLAIEYQ-IKFVETSAKDSLNVEYAF 527
           R+            + +E+G++LA + + +K++E SA     ++  F
Sbjct: 126 RETISLLADQGLSALKREQGQKLANKIRAVKYMECSALTQRGLKQVF 172


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
 Frame = +3

Query: 231 TAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIK-NWIRNIEENASADVEKMILGNK 407
           +AGQE +  +    Y  +   ++ + V +  SFEN+K  W+  I  +       +++G +
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQ 59

Query: 408 CDL------------DSQRQVSKERGEQLAIEYQ-IKFVETSAKDSLNVEYAF 527
            DL            + Q+ ++ E+GE+LA E + +K+VE SA     ++  F
Sbjct: 60  IDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVF 112


>X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein
           Agm1 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 306 DVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGEQLAIEYQI 476
           D T ++ ++NIK W+  + EN  ++    +LGN    D++R VS   G   A  YQI
Sbjct: 329 DTTGQQFYDNIKRWLDVVPENRFSN---WVLGNH---DNKR-VSSRLGVARADLYQI 378


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
 Frame = +3

Query: 309 VTNEKSFENIKNWIRNIEENASAD--VEKMILGNKCDLDSQRQVSKERGEQLAIEYQIKF 482
           V+++   E  KN+  N+E     D  + +MI   +  +    ++ K+  ++   E +++ 
Sbjct: 47  VSHKAQLERFKNYANNLEIEDLRDGMIAQMIEFMESMIKEMSELKKQLKQKSTQEIEVQT 106

Query: 483 VETS--AKDSLNVEYAFY------TLARDIKAKMEKKQKEASNPSGGKEWRPQADAERRS 638
            + S  A+D+  V              RD  A+    Q+E    SGG+  +P+   ++RS
Sbjct: 107 AQPSELAEDAPFVPQTRKGRVPKEARKRDNNARQRSAQRETPKSSGGQSKQPKKKKKKRS 166


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 543 DIKAKMEKKQKEASNPSGGKEWRPQADAERRSQ 641
           D +A + K++++A+     ++W  +AD  R ++
Sbjct: 860 DTRANIRKQERQATIEQWQQQWDAEADTSRHTR 892


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 372 SADVEKMILGNKCDLDSQRQVSKERGEQLAIEYQIKFVETS 494
           SA ++ + L  KC  + ++Q ++ + E  AI  + K +ETS
Sbjct: 241 SATLKDLKLAKKCTEEKEQQYNQFKQEMEAILARKKELETS 281


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,158
Number of Sequences: 2352
Number of extensions: 12497
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)