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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1267
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   219   4e-58
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   213   3e-56
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    33   0.031
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.13 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    29   0.51 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    29   0.67 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    28   1.2  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    28   1.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.7  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   3.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   3.6  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    26   4.7  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   6.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.3  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.3  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.3  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  219 bits (534), Expect = 4e-58
 Identities = 107/177 (60%), Positives = 133/177 (75%), Gaps = 2/177 (1%)
 Frame = +2

Query: 191 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 370
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 371 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 544
           R++SSIEQK E  G+  + ++ KEYR K+E+EL  IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63  RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122

Query: 545 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNF 715
           Y KMKGDYYRYLAE A GE R    + S + Y+ A EI+ A++ PTHPIRLGLALNF
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNF 179


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  213 bits (519), Expect = 3e-56
 Identities = 106/178 (59%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
 Frame = +2

Query: 188 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 367
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAYKN++GARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 368 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 541
           WR+ISSIEQK E  G+ R+  + KEYR K+E EL +IC+DVL +L+KHLIP A+  ESKV
Sbjct: 61  WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120

Query: 542 FYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNF 715
           FY KMKGDYYRYLAE   GE      + S +AY+ A +I+ A++ PT P+RLGLALNF
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNF 178


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 25/104 (24%), Positives = 44/104 (42%)
 Frame = +2

Query: 164  ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 343
            I S+  S  S   EEL+ R +     + Y+ MA  + E  E   ++ +    LLS  Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056

Query: 344  VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 475
                    +R+ + +E+          +  EY   +E+ L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 191 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 361
           SV    + ++ K  ++ E + ++ + +K V+  ET  E+SN+E N LL + YK V     
Sbjct: 3   SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61

Query: 362 SSWRVIS 382
           S+W   S
Sbjct: 62  STWATFS 68


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +2

Query: 197 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 376
           +K+E  QR  +  Q  R D M    +    +G   S+ +    SV+ +    +R  S+  
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374

Query: 377 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 466
            S  E + E SE   R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
 Frame = +2

Query: 320  LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 493
            L+S   +N   A RS  + +  I +    S +  ++ + YR VK  K L  +IC+  +  
Sbjct: 968  LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024

Query: 494  LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAK 670
            L   L   A++ E       +  +  RY+  ++   E R    ED+++A + ++  + A 
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082

Query: 671  MQPTHP-IRLGLALN 712
            +QP H  I L LA+N
Sbjct: 1083 LQPMHSIIALRLAIN 1097


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 78  KANAFECSRHIEICFVPSANANSIRG-ISELVLFHRPRCPSTRKNWCNVPNWPNKLSDM 251
           K N+  C +  E+  V S+N   +    S+ + F +PR     K   N   WPN+ S +
Sbjct: 42  KENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHL 100


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = +2

Query: 389 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 565
           E      E+ Q++A+ Y+V  + +LRE  YD LG +    +P A   ++  F+  +  GD
Sbjct: 43  ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99

Query: 566 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 676
            +R Y+ E+   +    ++  E   KA +D  E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 491  LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 628
            +++K  IP++   E+K  Y +  GD+     +L E A  E  H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 338 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 454
           KN+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = +2

Query: 197 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 367
           D    ++RA  A QA E+ + +   +K  E+     +L      LL V  + +   R  S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322

Query: 368 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 517
                   +K    +    + KEY  K +++LR+   D+  LL KH I +
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 114 ICFVPSANANSIRGISELVLFHRPRCPSTRKNWCNVPNWPNKLSD 248
           I  V +A   S+  I EL     P+C      + N P W + L D
Sbjct: 75  ISSVKAAYGRSMEEIIELKGVELPKCLPKHARYHNAPKWRSSLMD 119


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 326 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 460
           S +Y  + G   S W+ I  ++ K+ G +R    ++ Y    +KE
Sbjct: 61  SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
 Frame = +2

Query: 200 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG-ARRSSWRV 376
           KE L    +L E +    D + A +      V       NLL + YKNV   A  +    
Sbjct: 608 KEHLYSFLQLVEPSFAKSDSSNATESQISESVRKGISIFNLLFIVYKNVCSQAGINPSTK 667

Query: 377 ISSIEQKTEGSE------RKQQMAKEYRVKVEKELREICYDVLGLLDKHLI 511
           +  +++ T   E      +  Q  +EY+ K E ELR     +  LL+  LI
Sbjct: 668 LEDLDEHTLSDELTYITKKFVQKDQEYQTK-EIELRNYKITLQSLLEDKLI 717


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 682 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 581
           C L+F L + K+ L+    I+Y  + GFS  H C
Sbjct: 46  CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 68  HKNRQFCRKGKNVFEPANLSTI 3
           +K RQ C    N F P +LSTI
Sbjct: 232 YKARQICNDIMNTFHPNDLSTI 253


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 410 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 532
           E++Q  A +YR+KVE+   +I   V  +  L+  L  + SNPE
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,048
Number of Sequences: 5004
Number of extensions: 60349
Number of successful extensions: 198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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