BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1267 (722 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 219 4e-58 SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 213 3e-56 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 33 0.031 SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.13 SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.51 SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 0.67 SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 1.2 SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 1.2 SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.7 SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 3.6 SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.6 SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 4.7 SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 6.3 SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.3 SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3 SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 8.3 SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.3 >SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 219 bits (534), Expect = 4e-58 Identities = 107/177 (60%), Positives = 133/177 (75%), Gaps = 2/177 (1%) Frame = +2 Query: 191 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 370 + +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62 Query: 371 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 544 R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVF Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122 Query: 545 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNF 715 Y KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNF Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNF 179 >SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 213 bits (519), Expect = 3e-56 Identities = 106/178 (59%), Positives = 133/178 (74%), Gaps = 2/178 (1%) Frame = +2 Query: 188 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 367 MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60 Query: 368 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 541 WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKV Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120 Query: 542 FYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNF 715 FY KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNF Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNF 178 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 33.5 bits (73), Expect = 0.031 Identities = 25/104 (24%), Positives = 44/104 (42%) Frame = +2 Query: 164 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 343 I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056 Query: 344 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 475 +R+ + +E+ + EY +E+ L++ C Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100 >SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces pombe|chr 2|||Manual Length = 542 Score = 31.5 bits (68), Expect = 0.13 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 191 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 361 SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61 Query: 362 SSWRVIS 382 S+W S Sbjct: 62 STWATFS 68 >SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator Prp45|Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 29.5 bits (63), Expect = 0.51 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Frame = +2 Query: 197 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 376 +K+E QR + Q R D M + +G S+ + SV+ + +R S+ Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374 Query: 377 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 466 S E + E SE R+Q++ +E R + EK+LR Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407 >SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1207 Score = 29.1 bits (62), Expect = 0.67 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Frame = +2 Query: 320 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 493 L+S +N A RS + + I + S + ++ + YR VK K L +IC+ + Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024 Query: 494 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAK 670 L L A++ E + + RY+ ++ E R ED+++A + ++ + A Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082 Query: 671 MQPTHP-IRLGLALN 712 +QP H I L LA+N Sbjct: 1083 LQPMHSIIALRLAIN 1097 >SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 285 Score = 28.3 bits (60), Expect = 1.2 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +3 Query: 78 KANAFECSRHIEICFVPSANANSIRG-ISELVLFHRPRCPSTRKNWCNVPNWPNKLSDM 251 K N+ C + E+ V S+N + S+ + F +PR K N WPN+ S + Sbjct: 42 KENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHL 100 >SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces pombe|chr 2|||Manual Length = 355 Score = 28.3 bits (60), Expect = 1.2 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Frame = +2 Query: 389 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 565 E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99 Query: 566 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 676 +R Y+ E+ + ++ E KA +D E SK ++Q Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138 >SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr 1|||Manual Length = 1778 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 491 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 628 +++K IP++ E+K Y + GD+ +L E A E H V+ D+ Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656 >SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr 2|||Manual Length = 463 Score = 26.6 bits (56), Expect = 3.6 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +2 Query: 338 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 454 KN+ S+ R +SS + K +E + M +Y K+E Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388 >SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 26.6 bits (56), Expect = 3.6 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Frame = +2 Query: 197 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 367 D ++RA A QA E+ + + +K E+ +L LL V + + R S Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322 Query: 368 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 517 +K + + KEY K +++LR+ D+ LL KH I + Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369 >SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 425 Score = 26.2 bits (55), Expect = 4.7 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 114 ICFVPSANANSIRGISELVLFHRPRCPSTRKNWCNVPNWPNKLSD 248 I V +A S+ I EL P+C + N P W + L D Sbjct: 75 ISSVKAAYGRSMEEIIELKGVELPKCLPKHARYHNAPKWRSSLMD 119 >SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 25.8 bits (54), Expect = 6.3 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = +2 Query: 326 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 460 S +Y + G S W+ I ++ K+ G +R ++ Y +KE Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105 >SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 952 Score = 25.4 bits (53), Expect = 8.3 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Frame = +2 Query: 200 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG-ARRSSWRV 376 KE L +L E + D + A + V NLL + YKNV A + Sbjct: 608 KEHLYSFLQLVEPSFAKSDSSNATESQISESVRKGISIFNLLFIVYKNVCSQAGINPSTK 667 Query: 377 ISSIEQKTEGSE------RKQQMAKEYRVKVEKELREICYDVLGLLDKHLI 511 + +++ T E + Q +EY+ K E ELR + LL+ LI Sbjct: 668 LEDLDEHTLSDELTYITKKFVQKDQEYQTK-EIELRNYKITLQSLLEDKLI 717 >SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 85 Score = 25.4 bits (53), Expect = 8.3 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 682 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 581 C L+F L + K+ L+ I+Y + GFS H C Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75 >SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1077 Score = 25.4 bits (53), Expect = 8.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 68 HKNRQFCRKGKNVFEPANLSTI 3 +K RQ C N F P +LSTI Sbjct: 232 YKARQICNDIMNTFHPNDLSTI 253 >SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosaccharomyces pombe|chr 2|||Manual Length = 421 Score = 25.4 bits (53), Expect = 8.3 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +2 Query: 410 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 532 E++Q A +YR+KVE+ +I V + L+ L + SNPE Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,034,048 Number of Sequences: 5004 Number of extensions: 60349 Number of successful extensions: 198 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 192 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 339215786 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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