Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1266
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 62 1e-10
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 49 8e-07
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 47 2e-06
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 29 0.87
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 2.0
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.0
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 3.5
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 27 3.5
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 26 4.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 4.6
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 6.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.1
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 8.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 8.1
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 61.7 bits (143), Expect = 1e-10
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Frame = +2
Query: 230 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 409
+++ AGSRY+P A G+SH+L A TT+ S+ I R+ +G +S RE I
Sbjct: 45 LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102
Query: 410 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA---PRLKYDIISLPPQIRAVDLLHK 580
T + L +L +V +F P++L + R++ ++ A+ LH+
Sbjct: 103 LTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHE 162
Query: 581 AAYRRGLGNSLFISPKRINDISSESLQLFASQ 676
A+ RG+GN +++ IS ++ FAS+
Sbjct: 163 KAFHRGIGNEVYLPASASPSIS--EIKDFASK 192
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 48.8 bits (111), Expect = 8e-07
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Frame = +2
Query: 245 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEA 424
KAGSRYE + G+SH + A T+ ++ KL +G S RE + Y
Sbjct: 74 KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133
Query: 425 TQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIISL--PPQIRAVDLLHKAAYRRG 598
D + ++L V + + +L + Y+ L P + H A++
Sbjct: 134 FNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSELWTKPDALLGEFAHVTAFQNN 193
Query: 599 -LGNSLFISPKRINDISSESLQ 661
LGN L +P ++N I++ S++
Sbjct: 194 TLGNCLLCTPDKVNGITATSIR 215
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 47.2 bits (107), Expect = 2e-06
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 4/159 (2%)
Frame = +2
Query: 230 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 409
V + AGSR E G +H L A TKN S ++ + GA+++A RE
Sbjct: 46 VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105
Query: 410 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP---RLKYDIISLPPQIRAVDLLHK 580
Y A ++ + +A+ +L ++++N + R + ++ + ++ D LH
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMADEV-VFDHLHA 164
Query: 581 AAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
AY+ LG ++ + I ++ E L + N R
Sbjct: 165 TAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDR 203
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 0.87
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 152 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 322
DV+ +S LP + A D+GS +R + + E E+G+ H+LR +
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191
Query: 323 KNISSFLIQRKLSQIG 370
+++ + Q+ S G
Sbjct: 192 GTLATRVTQQAQSLQG 207
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 140 AVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLT 319
A + VR+Q LP+ FV GSP Q +LG + + + G+T
Sbjct: 857 APHRAVRLQIEDLPSNVFVTNRGRGSPA--------------DQYDLGAAQFITAVNGVT 902
Query: 320 TKNISSFLIQRKLSQIGAYVSAS 388
T N+ F+ + + +YV S
Sbjct: 903 TLNLEDFVREIRKIDDNSYVRVS 925
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 392 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 493
+RE YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 282 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 130
PN ACG+ R+ + + T ++ + +A N LDW + S + A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 578 KAAYRRGLGNSLFISPKRINDISSESLQ 661
K ++RRGL N + S KR+ D E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = -2
Query: 486 NSWFETKLFRISSASF---------NLSCVASKV*YMNSLSPEALTYAPI 364
N W ET +++I ASF +L + SKV Y+ +L+ E++ PI
Sbjct: 12 NWWRETSVYQIYPASFKDSNGDGFGDLEGIISKVDYLKALNVESIWLCPI 61
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 27 FVAILPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 134
FVA L V + L +WH KL F ++ PK+
Sbjct: 70 FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 278 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 433
L S L S +G T+ N+S+ QR ++ + S + D +YY T D
Sbjct: 79 LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 6.1
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +2
Query: 266 PQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR-EFIYYTL-EATQDKL 439
P+AEL H+L G + ++S+F I +++ S R E ++ EA+ +
Sbjct: 19 PRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSER 78
Query: 440 NDALE-ILNNLVSNQEFRPWELNDNAPRLKYDIISLPP 550
AL+ ILNN S+ D+ RL D +SL P
Sbjct: 79 KLALQGILNNCSSSLLSFASSTLDSLVRL--DFLSLLP 114
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 639 SLILFGEMKSELPSPRR*AALWSKSTARIWGGREIISYFRRGALSLS 499
S++ F + E + + AL SK + +WGG++ I+ F LSL+
Sbjct: 842 SILHFANLVGEPATQKSSIALVSKMVS-LWGGKDGIAGFENFTLSLT 887
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 3 RRLRKS*AFVAILPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLRRQ*RKMLGSN 167
RRL AF I+ + K +R W + +SP R G T KL RK L S+
Sbjct: 324 RRLSSHIAFNGIVSYLDKCVRAWDDQYASP------RRGITGKLLFASRKYLSSS 372
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 515 PRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSL-FISPKRINDISSESL 658
PR KYD++SL A L + + L L ++S I+SESL
Sbjct: 226 PRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIWLSFYLFGAIASESL 274
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 164 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 343
Q+ ++ TFV A + RV +FK+ + P A + + LTT + S
Sbjct: 174 QNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRS 233
Query: 344 IQ 349
+Q
Sbjct: 234 VQ 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,044
Number of Sequences: 5004
Number of extensions: 62676
Number of successful extensions: 165
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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