Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1266
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 91 6e-19
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 88 7e-18
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 81 6e-16
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 62 6e-10
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 52 6e-07
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 40 0.003
12_02_0312 + 17395716-17398112 31 1.2
04_01_0310 + 4197835-4197875,4197994-4198924 29 2.8
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 29 2.8
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 29 3.6
11_06_0545 + 24839536-24843421,24843871-24844310 29 4.8
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 6.4
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 6.4
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 28 8.4
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 91.5 bits (217), Expect = 6e-19
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Frame = +2
Query: 170 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 349
+ LPN +A+ + SP V + GS YE A G SH+L A +T N S +
Sbjct: 73 TTLPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLV 132
Query: 350 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 529
R++ IG VSAS RE + YT +A + + + +E+L + V N F WE+ + ++K
Sbjct: 133 REVEAIGGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAFFNWEIKEQLEKIKA 192
Query: 530 DI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
+I +S PQ ++ LH A Y L L I+ + S L+ F ++N T R
Sbjct: 193 EIAEVSDNPQGLLLEALHSAGYSGALAKPLMAPQSAIHRLDSSILEEFIAENYTAPR 249
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 87.8 bits (208), Expect = 7e-18
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 2/177 (1%)
Frame = +2
Query: 170 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 349
+ LPN +A+ + P V + GS YE + G SH+L A +T N S +
Sbjct: 125 TTLPNGIKIASETSPIPAVSVGLYIDCGSVYETSSSSGTSHLLERMAFKSTTNRSHLRLV 184
Query: 350 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 529
R++ IG V AS RE + YT +A + + +E+L + V N F WE+ + ++K
Sbjct: 185 REVEAIGGNVFASASREQMSYTYDALKCYAPEMVEVLIDSVRNPAFLEWEVKEQLQKIKS 244
Query: 530 DI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
+I +S P ++ LH A Y L L S +N + +L+ F S+N T R
Sbjct: 245 EISEVSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYTAPR 301
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 81.4 bits (192), Expect = 6e-16
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 2/188 (1%)
Frame = +2
Query: 137 PAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGL 316
P + + + + + L N +A+ P V + GS +E LG + +L+ A
Sbjct: 69 PDLVEPGKTKITTLANGVKIASETTPGPSCSVGVYVNCGSVHEAPETLGATQLLKKMAYT 128
Query: 317 TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPW 496
TT N S + R++ +G V AS +RE + Y+ A + + + +E+L + V N F W
Sbjct: 129 TTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKTYMPEMVEVLIDCVRNPAFLDW 188
Query: 497 ELNDNAPRLKYDI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFA 670
E+ + +LK ++ S P+ ++ LH Y L L S ++ +++ L+ F
Sbjct: 189 EVKEQIMKLKAELAEASSNPETFLLEALHSTGYSGALATPLIASESSVSRLNTNVLEYFL 248
Query: 671 SQNITPSR 694
++N T R
Sbjct: 249 AENYTAPR 256
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 61.7 bits (143), Expect = 6e-10
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
Frame = +2
Query: 170 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 349
+ LPN VA+ D P V + +GS YE G+SH+L + T + S I
Sbjct: 67 TTLPNGVRVASEDLPGPSACVGVFVDSGSVYETAETAGVSHLLERLSFKDTAHRSHLQIV 126
Query: 350 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 529
+ + G + AS RE Y+ E + L A+E+L + V N F E+ +
Sbjct: 127 QDVEATGGNIGASASREQTVYSYETLKAYLPQAIEVLIDCVRNPLFLQDEVERQVAFARE 186
Query: 530 DIISLP--PQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
++ L P+ + L+ Y L N L + + I+ +Q F +N T R
Sbjct: 187 EVQELQKNPERFLQESLNLVGYTGALANPLVAPEESLTRINGSIIQKFYHENFTADR 243
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 51.6 bits (118), Expect = 6e-07
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Frame = +2
Query: 170 SVLPNKTFVAALDN-GSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 346
+ LPN VA + S V + AGSRYE + G++H + T + ++ +
Sbjct: 102 TTLPNGLRVATESSLASRTATVGVWIDAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQL 161
Query: 347 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 526
+ ++ IG +++A RE Y + + AL IL +++ + + + +
Sbjct: 162 EEEIENIGGHLNAYTSREQTTYYAKVLDKDVPRALNILADILQHSKLEESRIERERDVIL 221
Query: 527 YDIISLPPQIRAV--DLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
++ + Q V D LH A++ LG + S + + I+ E LQ + + T R
Sbjct: 222 REMEEVEGQYEEVIFDHLHATAFQYTSLGRPILGSAENVKSITQEDLQKYIETHYTAPR 280
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 39.5 bits (88), Expect = 0.003
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 6/206 (2%)
Frame = +2
Query: 95 FIRHVT-IRGYAQAAPAVK-KDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEP 268
F+RH + + +P ++ D R+ + + A + + V + AGSR+E
Sbjct: 34 FLRHASPVPRDPDHSPFLRLPDARVSTLPTGLRIVTQAYPAATRMASVGVWVDAGSRFEL 93
Query: 269 QAELGLSHVLRSAAGL-TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLND 445
G +H L A TT+ ++ ++ ++ +GA ++A RE Y + +
Sbjct: 94 PGTNGTAHFLEHMAFKGTTRRPTANALEVEIENMGARLNAYTSREQTTYFADVQGRDVPI 153
Query: 446 ALEILNNLVSNQEFRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYR-RGLGNSLF 616
AL++L++++ F L + ++ + + V D LH AA++ LG+++
Sbjct: 154 ALDVLSDILQYPCFPANALQRERGVILREMEEVQGMMDEVIFDHLHAAAFQGHPLGDTIL 213
Query: 617 ISPKRINDISSESLQLFASQNITPSR 694
+ I IS + L+ + + + T R
Sbjct: 214 GPVENIKSISKKDLEQYITTHYTCPR 239
>12_02_0312 + 17395716-17398112
Length = 798
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 293 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 472
+++S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 473 SNQ 481
S +
Sbjct: 292 SGR 294
>04_01_0310 + 4197835-4197875,4197994-4198924
Length = 323
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 416 LEATQDKLND----ALEILNNLVSNQEFRPWELNDNAPRLKYDIISLPPQIRAVDLLHKA 583
LE +KL++ A+++ + +S E+R WEL+ +L +++ R V LL
Sbjct: 46 LEYENNKLSNEKRWAVDVYSRKISTLEYRVWELDHQNNKLSSELVRQTEDTRTVGLLFMN 105
Query: 584 AYRR 595
A R
Sbjct: 106 AADR 109
>01_05_0343 +
21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 230 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSA 385
+++A K GS E + E G++H++ A T ++ I + L IGA A
Sbjct: 80 LSLAVKVGSVVEEEDERGVAHIVEHLAFSATSRYTNHDIVKFLESIGAEFGA 131
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 445 IIQFVLCCFQ-SVIYEFSVTRSTNICSNL 362
+I +VL CFQ SVI F V S++ CS +
Sbjct: 159 VISYVLVCFQSSVILRFMVFFSSDFCSGI 187
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 389 GDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWE 499
GD +FI +E+ Q L DA + NN S+Q+ W+
Sbjct: 29 GDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQ 65
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 275 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 454
E+ + +LRS + +K I + + + I D +F+Y +LE + L D ++
Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574
Query: 455 I 457
+
Sbjct: 575 L 575
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 71 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 211
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 338 FLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA 514
F I ++Q+GA VSA R+ + +E D L + + +SN P E +NA
Sbjct: 506 FAIFNSVNQLGAKVSAVQGRDVTKHLIEIWLDLLRSMMTEVEWRISNYVPTPEEYMENA 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,950,606
Number of Sequences: 37544
Number of extensions: 389498
Number of successful extensions: 840
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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