Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1266
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         56   2e-08
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       47   1e-05
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.53 
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.6  
SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)          28   6.5  
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07)                 28   6.5  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  28   6.5  
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)          28   6.5  
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 49/80 (61%)
 Frame = +2

Query: 131 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 310
           A  +V++   +Q + L N   VA+L+  SP++RV + F AGSRYE  + LG++H+LR+AA
Sbjct: 20  AKGSVRERQTVQVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLGITHMLRNAA 79

Query: 311 GLTTKNISSFLIQRKLSQIG 370
            L         + ++++ +G
Sbjct: 80  YLLLDFKGKHFVGKRMALVG 99


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
 Frame = +2

Query: 170 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSF-LI 346
           + LPN   VA+ ++    + V +    GSRYE     G++HV+   A  +T    S   I
Sbjct: 420 TTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPSHDDI 479

Query: 347 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 526
            ++L  +G     +  R+ I Y   +    L  A+E+L+  V   +    E+++    ++
Sbjct: 480 MQELEPVGGMADCTSFRDAIVYGTSSFTSGLPLAVEVLSEAVMRPQITSQEVDEQKMLVQ 539

Query: 527 YDI----ISLPPQIRAVDLLH 577
           +++    + L P+    D++H
Sbjct: 540 FELENLEMRLDPEPILTDMVH 560


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +2

Query: 152 DVRIQSSVLPNKTFVAAL---DNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 322
           D + +   LP   +VA     D+G+P T+      +    E   E+G+ H+LR    LT 
Sbjct: 114 DAKPKDLRLPTDAYVAVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLRDIKNLTA 173

Query: 323 KNISSFLIQRKLSQIGAYVSASGDREFI 406
             +S  +  +  S  G +      R+++
Sbjct: 174 GTLSQRITNQLTSLKGLHARLGDIRDYL 201


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 7   DSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKER 153
           D VN +  L   L+  +  E GI   RR LYS C+D+ +R       ER
Sbjct: 137 DVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAER 185


>SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G  +    ST++G
Sbjct: 45  LWRDENRRTRRKTLGAKVRPTNSTHVG 71


>SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G  +    ST++G
Sbjct: 70  LWRDENRRTRRKTLGAKVRPTNSTHVG 96


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 164 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGS 256
           Q S L N T+    DNGSP+T V I    GS
Sbjct: 546 QFSHLVNLTWKLGRDNGSPITHVIIQQHVGS 576


>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
          Length = 658

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G       ST++G
Sbjct: 599 LWRDENRRTRRKTLGAKARPTNSTHVG 625


>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G       ST++G
Sbjct: 57  LWRDENRRTRRKTLGAKARPTNSTHVG 83


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 628  LWRDEERVTQSTTIGCLMEQIYSTNLG 548
            LWRDE R T+  T+G       ST++G
Sbjct: 1248 LWRDENRRTRRKTLGAKARPTNSTHVG 1274


>SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07)
          Length = 305

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G       ST++G
Sbjct: 77  LWRDENRRTRRKTLGAKARPTNSTHVG 103


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G       ST++G
Sbjct: 285 LWRDENRRTRRKTLGAKARPTNSTHVG 311


>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
          Length = 406

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
           LWRDE R T+  T+G       ST++G
Sbjct: 355 LWRDENRRTRRKTLGAKARPTNSTHVG 381


>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 572 LHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCA 700
           LH  A RR    S  I+  R   +  ES+++ A QN+ PSR A
Sbjct: 83  LHMDA-RRKESRSDIIAKNRSLTLDGESIRITAKQNVPPSRSA 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,050,141
Number of Sequences: 59808
Number of extensions: 458136
Number of successful extensions: 1164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)