Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1266
(712 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 138 2e-32
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 138 2e-32
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 136 6e-32
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 61 3e-09
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 59 2e-08
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 59 2e-08
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 59 2e-08
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 58 2e-08
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 138 bits (334), Expect = 2e-32
Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 2/198 (1%)
Frame = +2
Query: 113 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 292
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 293 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 472
+LR + LTTK SSF I R + +G +S + RE + YT+E + ++ +E L N+
Sbjct: 82 LLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVT 141
Query: 473 SNQEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDIS 646
+ EFR WE+ D P+LK D + PQ ++ LH AAYR L N L+ RI ++
Sbjct: 142 TAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYRIGKVT 201
Query: 647 SESLQLFASQNITPSRCA 700
SE L F + T +R A
Sbjct: 202 SEELHYFVQNHFTSARMA 219
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 138 bits (334), Expect = 2e-32
Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 2/198 (1%)
Frame = +2
Query: 113 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 292
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 293 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 472
+LR + LTTK SSF I R + +G +S + RE + YT+E + ++ +E L N+
Sbjct: 82 LLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVT 141
Query: 473 SNQEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDIS 646
+ EFR WE+ D P+LK D + PQ ++ LH AAYR L N L+ RI ++
Sbjct: 142 TAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYRIGKVT 201
Query: 647 SESLQLFASQNITPSRCA 700
SE L F + T +R A
Sbjct: 202 SEELHYFVQNHFTSARMA 219
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 136 bits (330), Expect = 6e-32
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 2/198 (1%)
Frame = +2
Query: 113 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 292
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 293 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 472
+LR + LTTK SSF I R + +G +S + RE + YT+E + ++ +E L N+
Sbjct: 82 LLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVT 141
Query: 473 SNQEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDIS 646
+ EFR WE+ D P+LK D + PQ ++ LH AAY+ L N L+ RI ++
Sbjct: 142 TAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYQNALANPLYCPDYRIGKVT 201
Query: 647 SESLQLFASQNITPSRCA 700
SE L F + T +R A
Sbjct: 202 SEELHYFVQNHFTSARMA 219
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 61.3 bits (142), Expect = 3e-09
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 4/181 (2%)
Frame = +2
Query: 128 QAAPAVKKDV-RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRS 304
QAA V +V + + L + VA+ D+G V + AGSRYE + G +H L
Sbjct: 46 QAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEH 105
Query: 305 AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQE 484
A TK S ++ ++ +GA+++A RE Y +A L A+EIL +++ N
Sbjct: 106 MAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 165
Query: 485 FRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYRR-GLGNSLFISPKRINDISSES 655
E+ + ++ + ++ V D LH AY+ LG ++ + I IS +
Sbjct: 166 LGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKD 225
Query: 656 L 658
L
Sbjct: 226 L 226
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 58.8 bits (136), Expect = 2e-08
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +2
Query: 98 IRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAE 277
+R +R A A A++ Q S+L N VA+ + P V + GSR+E +
Sbjct: 27 LRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKN 86
Query: 278 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 457
G + L A TKN +++++ +GA+++A RE Y ++A L A+E+
Sbjct: 87 NGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 458 LNNLVSN 478
L ++V N
Sbjct: 147 LGDIVQN 153
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 58.8 bits (136), Expect = 2e-08
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +2
Query: 98 IRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAE 277
+R +R A A A++ Q S+L N VA+ + P V + GSR+E +
Sbjct: 27 LRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKN 86
Query: 278 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 457
G + L A TKN +++++ +GA+++A RE Y ++A L A+E+
Sbjct: 87 NGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 458 LNNLVSN 478
L ++V N
Sbjct: 147 LGDIVQN 153
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 58.8 bits (136), Expect = 2e-08
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +2
Query: 98 IRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAE 277
+R +R A A A++ Q S+L N VA+ + P V + GSR+E +
Sbjct: 27 LRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKN 86
Query: 278 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 457
G + L A TKN +++++ +GA+++A RE Y ++A L A+E+
Sbjct: 87 NGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 458 LNNLVSN 478
L ++V N
Sbjct: 147 LGDIVQN 153
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 58.4 bits (135), Expect = 2e-08
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Frame = +2
Query: 128 QAAPAVKKDV-RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRS 304
QAA V +V + + L + VA+ D+G V + AGSRYE + G +H
Sbjct: 37 QAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFPEH 96
Query: 305 AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQE 484
A TK S ++ ++ +GA+++A RE Y +A L A+EIL +++ N
Sbjct: 97 MAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 156
Query: 485 FRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYRR-GLGNSLFISPKRINDISSES 655
E+ + ++ + ++ V D LH AY+ LG ++ + I IS +
Sbjct: 157 LGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKD 216
Query: 656 L 658
L
Sbjct: 217 L 217
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,993,998
Number of Sequences: 237096
Number of extensions: 2094804
Number of successful extensions: 3949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3949
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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