Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1266
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 102 2e-22
Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical pr... 87 1e-17
Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical pr... 87 1e-17
AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical ... 87 1e-17
AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical ... 87 1e-17
AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical ... 82 4e-16
Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AC025726-19|AAK73925.1| 477|Caenorhabditis elegans Mitochondria... 50 2e-06
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 33 0.15
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 29 2.5
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 29 4.3
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 29 4.3
AL161712-5|CAC70131.1| 244|Caenorhabditis elegans Hypothetical ... 29 4.3
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 102 bits (245), Expect = 2e-22
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 1/169 (0%)
Frame = +2
Query: 176 LPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRK 355
L N V +D+ P+ + +AF+AGSRYE + GLSH +R+ G T+ +
Sbjct: 27 LGNGLTVGTIDSHKPIAHLVLAFRAGSRYEKANQAGLSHTIRNFVGRDTQEYFGNTVVWT 86
Query: 356 LSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDI 535
LSQ G + + R+ +L ++ + L +L + N F+PWE+ D P ++ D
Sbjct: 87 LSQTGGVLKSFTSRDLFGVSLTIPRESTSVGLSVLGQVAGNPGFKPWEVEDVLPTMRADN 146
Query: 536 ISLPPQIRAVDLLHKAAYRR-GLGNSLFISPKRINDISSESLQLFASQN 679
VD +HKAAYR GLGNS++ +I I + +L FA Q+
Sbjct: 147 GYRTAYDLVVDQIHKAAYRNGGLGNSIYAPCSKIGSICTSTLSSFAEQH 195
>Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 131 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 310
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + GL+H++R++
Sbjct: 29 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRNSV 88
Query: 311 GLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 490
G N + +Q G ++A +R+ + + +D+ L +L L N F+
Sbjct: 89 GRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQL-GNNAFK 147
Query: 491 PWELND-NAPRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLF 667
PW++ D L D L A + LH+AA+R G L +S +N++S++ L F
Sbjct: 148 PWDVEDVKHDTLPADATYLTGTTIAFEQLHQAAFRNG---GLGLSNYSVNNVSAKDLSAF 204
Query: 668 ASQNI 682
A + +
Sbjct: 205 AKERL 209
>Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 131 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 310
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + GL+H++R++
Sbjct: 15 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRNSV 74
Query: 311 GLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 490
G N + +Q G ++A +R+ + + +D+ L +L L N F+
Sbjct: 75 GRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQL-GNNAFK 133
Query: 491 PWELND-NAPRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLF 667
PW++ D L D L A + LH+AA+R G L +S +N++S++ L F
Sbjct: 134 PWDVEDVKHDTLPADATYLTGTTIAFEQLHQAAFRNG---GLGLSNYSVNNVSAKDLSAF 190
Query: 668 ASQNI 682
A + +
Sbjct: 191 AKERL 195
>AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 131 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 310
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + GL+H++R++
Sbjct: 29 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRNSV 88
Query: 311 GLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 490
G N + +Q G ++A +R+ + + +D+ L +L L N F+
Sbjct: 89 GRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQL-GNNAFK 147
Query: 491 PWELND-NAPRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLF 667
PW++ D L D L A + LH+AA+R G L +S +N++S++ L F
Sbjct: 148 PWDVEDVKHDTLPADATYLTGTTIAFEQLHQAAFRNG---GLGLSNYSVNNVSAKDLSAF 204
Query: 668 ASQNI 682
A + +
Sbjct: 205 AKERL 209
>AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 131 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 310
+A A V+ +++VL N V++++ + + +AF+AGSRY+P + GL+H++R++
Sbjct: 15 SAAAKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRNSV 74
Query: 311 GLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 490
G N + +Q G ++A +R+ + + +D+ L +L L N F+
Sbjct: 75 GRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQL-GNNAFK 133
Query: 491 PWELND-NAPRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLF 667
PW++ D L D L A + LH+AA+R G L +S +N++S++ L F
Sbjct: 134 PWDVEDVKHDTLPADATYLTGTTIAFEQLHQAAFRNG---GLGLSNYSVNNVSAKDLSAF 190
Query: 668 ASQNI 682
A + +
Sbjct: 191 AKERL 195
>AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical
protein T24C4.1 protein.
Length = 427
Score = 81.8 bits (193), Expect = 4e-16
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 1/184 (0%)
Frame = +2
Query: 131 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 310
AA +K + L N V + +N ++++ +AF+AGSRYE + GL H +R+
Sbjct: 11 AAIKTQKPTGSLKTKLNNGLKVVSQENNGAISQLILAFRAGSRYEKVTQPGLVHHVRNFV 70
Query: 311 GLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 490
G ++ + + GA +++ R+ + +D+ AL IL ++ + F+
Sbjct: 71 GRDAQSYPGLQLVWSSAASGANLNSFATRDIFGVQISVARDQAAYALSILGHVAAKPAFK 130
Query: 491 PWELNDNAPRLKYDIISLPPQIRAVDLLHKAAYRR-GLGNSLFISPKRINDISSESLQLF 667
PWEL D P + D+ P + +H+AA+R L SL+ S ++ S+ L F
Sbjct: 131 PWELEDVTPTILADLSQKTPYGIVFEDIHRAAFRNDSLSFSLYSSKGQVGAYKSQELAKF 190
Query: 668 ASQN 679
A+++
Sbjct: 191 AAKH 194
>Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical
protein ZC410.2 protein.
Length = 458
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Frame = +2
Query: 170 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 349
+ LPN VA + G + + AGSRYE + G +H L A T + ++
Sbjct: 33 TTLPNGFRVATENTGGSTATIGVFIDAGSRYENEKNNGTAHFLEHMAFKGTPRRTRMGLE 92
Query: 350 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 529
++ IGA+++A RE Y + +KL+ +++IL++++ N ++ +
Sbjct: 93 LEVENIGAHLNAYTSRESTTYYAKCFTEKLDQSVDILSDILLNSSLATKDIEAERGVIIR 152
Query: 530 DIISLPPQIRAV--DLLHKAAYRRGLGNSLFISP-KRINDISSESLQLFASQNITPSR 694
++ + + V D+LH ++ + + P + I I+ LQ + + + R
Sbjct: 153 EMEEVAQNFQEVVFDILHADVFKGNPLSYTILGPIELIQTINKNDLQGYINTHYRSGR 210
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 52.8 bits (121), Expect = 2e-07
Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%)
Frame = +2
Query: 68 MASKTLVAPFIRHVTIRGYAQAAPAVK-KDV-----RIQSSVLPNKTFVAALDNGSPVTR 229
MA + V+ +R A+ AV KDV + + + L N V DNGS
Sbjct: 1 MALRLAVSSALRPALNSQVRNASSAVSVKDVLASAPQAEVTTLKNGFRVVTEDNGSATAT 60
Query: 230 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 409
V + + GSR+E + G++H L T +S ++ +L+ IGA +++ +R+
Sbjct: 61 VGVWIETGSRFENEKNNGVAHFLERLIHKGTGKRASAALESELNAIGAKLNSFTERDQTA 120
Query: 410 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIISLPP--QIRAVDLLHKA 583
++A + ++IL +++ N + ++ L ++ + Q+ D+LH A
Sbjct: 121 VFVQAGAQDVEKVVDILADVLRNSKLEASTIDTERVNLLKELEASDDYHQLVLFDMLHAA 180
Query: 584 AYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
++ L S+ + + I +IS++ L+ + + P R
Sbjct: 181 GFQGTPLALSVLGTSESIPNISAQQLKEWQEDHYRPVR 218
>AC025726-19|AAK73925.1| 477|Caenorhabditis elegans Mitochondrial
processing peptidasealpha protein 1 protein.
Length = 477
Score = 50.0 bits (114), Expect = 2e-06
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Frame = +2
Query: 176 LPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS-FLIQR 352
LPN V D V +A ++G RYE G+S ++ A ++++ SS +
Sbjct: 24 LPNGLKVCTEDTYGDFVTVGVAIESGCRYENGFPFGISRIVEKLAYNSSESFSSRDEVFA 83
Query: 353 KLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYD 532
KL + V R+ + Y +D ++ + +L++ + F L + Y+
Sbjct: 84 KLEENSGIVDCQSTRDTMMYAASCHRDGVDSVIHVLSDTIWKPIFDEQSLEQAKLTVSYE 143
Query: 533 IISLPPQIRAVDLL-----HKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
LP +I A+++L H+AA++ ++ I + F S+ TP R
Sbjct: 144 NQDLPNRIEAIEILLTDWIHQAAFQNNTIGYPKFGNNSMDKIRVSDVYGFLSRAHTPQR 202
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 56 KLTKMASKTLVAPFIRHVTIRGYAQAAP-AVKKDVRIQ---SSVLPNKTFVAALDNGSPV 223
KLT + SK L+ P H T + P VK +Q ++ LP + +V++ N P+
Sbjct: 1030 KLTVLESKKLIKPIKAHTTPTAASNTTPIPVKTTTTLQTTTATTLP-ENYVSSSTN-RPL 1087
Query: 224 TRVTIAFKAGSRYEPQAEL 280
T + I+ K GS P ++
Sbjct: 1088 TPIIISMKLGSTSSPSPQI 1106
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
R09E10.7 protein.
Length = 1717
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 16 NHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC 156
NH Y+L+ TY+ Q +RP++ DQ P + RC
Sbjct: 1006 NHLSNAAYFLERCPTYQRRFQPGQRPVFPYRDDQAQEPVPESAPNRC 1052
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 39 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 176
LP + K L +W+ K ML ATP+LR + +K+L N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 39 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 176
LP + K L +W+ K ML ATP+LR + +K+L N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
>AL161712-5|CAC70131.1| 244|Caenorhabditis elegans Hypothetical
protein Y66D12A.8 protein.
Length = 244
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 569 LLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAGTVI 712
++H A R+G+G+ F P+ + SS S S+ + R GT++
Sbjct: 197 IVHDALKRKGIGSGKFAVPQTPSSSSSSSAAAAGSETPSVKRKRGTLL 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,329,492
Number of Sequences: 27780
Number of extensions: 341715
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -