Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1266
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 582 QPIVVDWVTRSSSRQR 629
           QPI   W+TRS +R++
Sbjct: 81  QPISYKWITRSGTREQ 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 533 IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRIND--ISSESLQLFAS 673
           +I L  Q+   + +H ++  R L +S+F   +R+N   +S   L LF S
Sbjct: 294 MICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCS 342


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 249 LALVMNHKPNWD 284
           LAL +NH PN+D
Sbjct: 658 LALWLNHSPNYD 669



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 36  ILPKVSKNLRKWHPKLSSPPL 98
           +LPK++  + +W+P   + P+
Sbjct: 519 VLPKLTLEVEEWNPLTDTVPI 539


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 280 GIVACTTISCWTNNQ 324
           G+V  T+++CW  N+
Sbjct: 318 GLVGDTSLACWNENR 332


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 280 GIVACTTISCWTNNQ 324
           G+V+ T + CW  N+
Sbjct: 317 GLVSDTALGCWNENR 331


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 58  TYENGIQNSRRPLYSS 105
           TY NG+   +RP++S+
Sbjct: 300 TYSNGLPFPQRPIWSN 315


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 58  TYENGIQNSRRPLYSS 105
           TY NG+   +RP++S+
Sbjct: 300 TYSNGLPFPQRPIWSN 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,242
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)