Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1266
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph... 93 2e-19
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph... 91 9e-19
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta... 60 1e-09
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta... 60 1e-09
At3g29080.1 68416.m03641 hypothetical protein 30 1.7
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta... 28 5.3
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho... 28 7.0
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina... 27 9.3
>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 499
Score = 92.7 bits (220), Expect = 2e-19
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 2/181 (1%)
Frame = +2
Query: 158 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS 337
+++++ LPN +A + +P + + GS YE G +H+L A +T N S
Sbjct: 73 KLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSH 132
Query: 338 FLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP 517
F + R++ IG SAS RE + YT++A + + + +E+L + V N F WE+N+
Sbjct: 133 FRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELR 192
Query: 518 RLKYDI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPS 691
++K +I + P ++ +H A Y L N L+ I ++ E L+ F +N T S
Sbjct: 193 KVKVEIGEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLTGEVLENFVFENYTAS 252
Query: 692 R 694
R
Sbjct: 253 R 253
>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 503
Score = 90.6 bits (215), Expect = 9e-19
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 2/181 (1%)
Frame = +2
Query: 158 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS 337
++Q + LPN +A+ +P + + GS YE G +H+L A +T N +
Sbjct: 77 KLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTH 136
Query: 338 FLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP 517
F + R++ IG SAS RE + YT++A + + + +E+L + V N F WE+N+
Sbjct: 137 FRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELR 196
Query: 518 RLKYDIISLP--PQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPS 691
++K +I L P ++ +H A Y L + L+ ++ ++ E L+ F ++N T +
Sbjct: 197 KMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDRLNGELLEEFMTENFTAA 256
Query: 692 R 694
R
Sbjct: 257 R 257
>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
subunit, putative similar to mitochondrial processing
peptidase beta subunit, mitochondrial precursor,
Beta-MPP [Human] SWISS-PROT:O75439
Length = 535
Score = 60.5 bits (140), Expect = 1e-09
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
Frame = +2
Query: 170 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 346
+ LPN VA N S T V + AGSR+E G +H L T + +
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRAL 159
Query: 347 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 526
+ ++ IG +++A RE Y + +N AL++L +++ N +F +N +
Sbjct: 160 EEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVIL 219
Query: 527 YDIISLPPQIRAV--DLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
++ + Q V D LH A++ LG ++ + + I+ E LQ + + T SR
Sbjct: 220 REMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASR 278
>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
subunit, putative similar to mitochondrial processing
peptidase beta subunit, mitochondrial precursor,
Beta-MPP [Human] SWISS-PROT:O75439
Length = 531
Score = 60.5 bits (140), Expect = 1e-09
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
Frame = +2
Query: 170 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 346
+ LPN VA N S T V + AGSR+E G +H L T + +
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRAL 159
Query: 347 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 526
+ ++ IG +++A RE Y + +N AL++L +++ N +F +N +
Sbjct: 160 EEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVIL 219
Query: 527 YDIISLPPQIRAV--DLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSR 694
++ + Q V D LH A++ LG ++ + + I+ E LQ + + T SR
Sbjct: 220 REMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASR 278
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = -2
Query: 576 WSKSTARIWGGREIISYFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV 412
W + R WGG E++ RG + + + G+ +E K ++ N ++
Sbjct: 38 WERDLFRDWGGAEVVETGMRGMMGVKA-GVTEGWEDKQAKVLEVGVNAEVAGDRI 91
>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
domain-containing protein contains similarity to S-locus
protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
profile PF00226 DnaJ domain
Length = 695
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 145 YCRRSLGVAPDRNMTNKGGDESFGCHFRKFLETLGSIATKAYD 17
Y ++++ V PD+NM N+ E+F + L S+ K+YD
Sbjct: 430 YRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYD 472
>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
homolog-1 (IRE1-1) identical to Ire1 homolog-1
[Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
GI:15277136;
Length = 881
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 278 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDAL 451
+ + +++S + K I + + K S I + D FIY +LE LND +
Sbjct: 484 VAVKRLVQSHHDVAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLI 541
>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 956
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 209 NGSPVTRVTIAF--KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGA 373
N P R +A K GS E + + G++H++ A T ++ I + L IGA
Sbjct: 56 NSKPRMRAALALAVKVGSVLEEEDQRGVAHIVEHLAFSATTRYTNHDIVKFLESIGA 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,594
Number of Sequences: 28952
Number of extensions: 325024
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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