Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1265
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 368 e-102
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 365 e-101
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 365 e-101
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 364 e-101
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 363 e-101
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 363 e-101
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 362 e-100
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 361 e-100
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 361 e-100
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 190 8e-49
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 190 8e-49
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 188 3e-48
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 188 3e-48
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 186 1e-47
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 186 2e-47
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 186 2e-47
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 146 2e-35
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 145 2e-35
At4g37190.1 68417.m05265 expressed protein 34 0.11
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 31 0.56
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 31 0.74
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 31 0.74
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 29 2.3
At5g24010.1 68418.m02821 protein kinase family protein contains ... 29 3.0
At4g22070.1 68417.m03192 WRKY family transcription factor identi... 29 3.0
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 4.0
At1g45201.2 68414.m05185 lipase class 3 family protein Since thi... 29 4.0
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 5.2
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 28 6.9
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 9.2
At2g47830.2 68415.m05970 cation efflux family protein / metal to... 27 9.2
At2g47830.1 68415.m05969 cation efflux family protein / metal to... 27 9.2
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 368 bits (906), Expect = e-102
Identities = 167/213 (78%), Positives = 184/213 (86%), Gaps = 1/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 245
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 246 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 425
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 426 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 605
VRKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
Query: 606 VEPYNATLSVHQLVENTDETYCIDNEALYDICF 704
VEPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICF 213
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 365 bits (898), Expect = e-101
Identities = 166/212 (78%), Positives = 182/212 (85%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 365 bits (898), Expect = e-101
Identities = 168/213 (78%), Positives = 182/213 (85%), Gaps = 1/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 245
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 246 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 425
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 426 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 605
VRKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
Query: 606 VEPYNATLSVHQLVENTDETYCIDNEALYDICF 704
VEPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICF 213
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 364 bits (895), Expect = e-101
Identities = 168/212 (79%), Positives = 180/212 (84%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 363 bits (893), Expect = e-101
Identities = 166/212 (78%), Positives = 180/212 (84%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 363 bits (893), Expect = e-101
Identities = 166/212 (78%), Positives = 180/212 (84%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 362 bits (891), Expect = e-100
Identities = 168/212 (79%), Positives = 180/212 (84%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+ DCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 361 bits (889), Expect = e-100
Identities = 165/212 (77%), Positives = 181/212 (85%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 361 bits (887), Expect = e-100
Identities = 164/212 (77%), Positives = 180/212 (84%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 248
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 249 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 428
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 429 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 608
RKEAE+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 609 EPYNATLSVHQLVENTDETYCIDNEALYDICF 704
EPYNATLSVHQLVEN DE +DNEALYDICF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICF 212
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 190 bits (463), Expect = 8e-49
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
VRK A++C LQGF ++ +Y + +++ PSP+VS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 190 bits (463), Expect = 8e-49
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
VRK A++C LQGF ++ +Y + +++ PSP+VS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 3e-48
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
+RK A++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 188 bits (458), Expect = 3e-48
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
+RK A++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 186 bits (454), Expect = 1e-47
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
+RK A++C LQGF ++ ++ + +++ PSP+VS
Sbjct: 121 RLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTA 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDIC 213
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 186 bits (452), Expect = 2e-47
Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
+RK A++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 186 bits (452), Expect = 2e-47
Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 242
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 243 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 422
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 423 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 602
+RK A++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 701
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 146 bits (353), Expect = 2e-35
Identities = 71/209 (33%), Positives = 117/209 (55%), Gaps = 3/209 (1%)
Frame = +3
Query: 72 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 251
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 252 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 425
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 426 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KVSDT 602
+ +EA+ D L+GF + + Y +++ TYSV P+ + SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDV 181
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEAL 689
VV+PYN+ L++ +L N D +DN AL
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 145 bits (352), Expect = 2e-35
Identities = 71/209 (33%), Positives = 117/209 (55%), Gaps = 3/209 (1%)
Frame = +3
Query: 72 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 251
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 252 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 425
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 426 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KVSDT 602
+ +EA+ D L+GF + + Y +++ TYSV P+ + SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDV 181
Query: 603 VVEPYNATLSVHQLVENTDETYCIDNEAL 689
VV+PYN+ L++ +L N D +DN AL
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 33.9 bits (74), Expect = 0.11
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +3
Query: 69 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 236
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 237 GKYVPRAILVDLEP--GTMDS 293
Y PR + V+L+ GTM S
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +3
Query: 402 LVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 581
+++SV VVRKEAE+C+CLQ F RE D + Y V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF--FVSGSFKVDSVEAKKKEENFRETLRDMANSKYEYVK 57
Query: 582 SPKVSDTVVEP 614
S ++ D V+ P
Sbjct: 58 SFELEDEVMLP 68
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -2
Query: 374 GPVVTGAGLSEDEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLAAGGF--IVVYID 207
GP TG G +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 206 ALQLQVRVPMVSTG 165
+LQLQV++ +++G
Sbjct: 391 SLQLQVQIMSMASG 404
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -2
Query: 374 GPVVTGAGLSEDEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLAAGGF--IVVYID 207
GP TG G +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 206 ALQLQVRVPMVSTG 165
+LQLQV++ +++G
Sbjct: 391 SLQLQVQIMSMASG 404
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 519 GGCPYRNRCRRRASVSVGIPGGNHTIPLPFERRLKLNRRAQHPPCS 382
G CP R R S G GG P+P RR KL P CS
Sbjct: 32 GSCPRRRIQERFKSEQGGGGGGGDDFPVPVTRR-KLRAEPNCPRCS 76
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 484 SECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQL 365
SE W P R+ S++ RTT +T S+S ++ A+L
Sbjct: 443 SESTGWTPLRRFRGSSNSRTTERTVSSSGYHTLRISFAEL 482
>At4g22070.1 68417.m03192 WRKY family transcription factor identical
to WRKY transcription factor 31 (WRKY31) GI:15990589
from [Arabidopsis thaliana]
Length = 538
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -1
Query: 519 GGCPYRN---RCRRRASVSVGIPGGNHTIPLP 433
GGCP R RC S+ + GNH PLP
Sbjct: 326 GGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 357
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 477 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 364
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At1g45201.2 68414.m05185 lipase class 3 family protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 479
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 555 FCQGTLL*FWR*GGCPYRNRCRRRASVSVGI--PGGNHTIPLPFERRLKLNRRAQHPPCS 382
F + +L FW+ G Y+ R VGI PGG++ P + +L + PP +
Sbjct: 412 FIRSFILQFWK--GDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTT 469
Query: 381 VP 376
P
Sbjct: 470 TP 471
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 239 AAGGFIVVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 60
AAGGF + I + + ++ VP + G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.9 bits (59), Expect = 6.9
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Frame = -3
Query: 466 NPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPKG------ 305
N R DSA+ ++S ++ S+ S + PAP P L ICP G
Sbjct: 98 NNLRPRSDSATTSSSSHSQPLLSSSSS----SATSPAPTSPANVLPTGNICPSGKIQITG 153
Query: 304 --PERTESMVPGSKSTRMARGTYLPPEASL*YTLMRSNCKSESPW*APVGSMPCSSEMIS 131
R+ S V GS + G+ + + S SP VGS SS ++
Sbjct: 154 MTQSRSRSDVLGSGTGTYGHGSIMRGGGISPAKPTNTGGGSNSP--VNVGSSSRSSSTVA 211
Query: 130 QNLAPIW 110
PIW
Sbjct: 212 TGETPIW 218
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 75 EIVHIQAGQCGNQIGAKFWEIISD 146
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At2g47830.2 68415.m05970 cation efflux family protein / metal
tolerance protein, putative (MTPc1) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 468
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 497 RFRYGHPPHLQNQRRVP*QNNEHIFSCTIT*SVGHS 604
R+ +GHP H Q Q + P + E IF +T +G S
Sbjct: 54 RWHFGHPDHHQ-QYQKPGEEGEKIFRLGLTADIGLS 88
>At2g47830.1 68415.m05969 cation efflux family protein / metal
tolerance protein, putative (MTPc1) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 471
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 497 RFRYGHPPHLQNQRRVP*QNNEHIFSCTIT*SVGHS 604
R+ +GHP H Q Q + P + E IF +T +G S
Sbjct: 54 RWHFGHPDHHQ-QYQKPGEEGEKIFRLGLTADIGLS 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,104,914
Number of Sequences: 28952
Number of extensions: 288732
Number of successful extensions: 857
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -