Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1264
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.035
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.0  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +2

Query: 326 NTTYLSQETSQDRQTL-YTQLVNSYKWTDKIHEYSSFAHTLLSQN-------SLKRSYIN 481
           NT+ L    S     L Y    NS+ WT   H +++ +H   +QN        ++  Y+N
Sbjct: 260 NTSSLITTPSPSASPLAYQHEYNSFNWTANGHGHNTSSHNYYAQNYAPTYYGQMQPDYLN 319

Query: 482 SGSTKRRGKLQSNHNVA 532
           S +T+    +Q+ +N+A
Sbjct: 320 SQTTQNH--MQAMNNMA 334


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 46  FGFQTIL*VFKMNQTINVGAIKFRFKFTTDT 138
           FG+QT+L  F +   + +  +K   K T  T
Sbjct: 371 FGYQTLLITFHIGSQLVLHTVKTVLKTTMST 401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,997
Number of Sequences: 336
Number of extensions: 2657
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)