Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1264
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   1.4  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   7.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   7.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.9  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 305 TAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNS 460
           T P NLGN T +S ET ++ QTL + + +S + +    E  +   T L + +
Sbjct: 526 TTPKNLGNLTAIS-ETLENGQTLKSNMASSIEKSKTSTEVVASYDTTLDEET 576


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 266 RDLEQTVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTL 445
           R L +  S LPIPT   +L     L+ + S D     +Q  N + + +K   +++  H L
Sbjct: 204 RSLREVGSNLPIPTG--SLTKIDGLNNQLSND--LTRSQTTNIFGFAEKASSFAAAVHKL 259


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 244  EQR*YKLEGLGTDSEW 291
            EQR Y ++GL  D+EW
Sbjct: 1022 EQREYNMDGLDRDTEW 1037


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 409 ISPFIAVNQLRVQCLPVL*GFLTQIRGITKIQRSSGYRETTHCLFQVPQVYI 254
           I P +A++ L +  +P    FL +  G   +Q    Y +  +  FQV QV++
Sbjct: 429 ILPSVALSIL-MSLVPPFIKFLGKFGGALTVQEIENYCQNWYYAFQVVQVFL 479


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 287  SGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYK 400
            +G+PI  A +N   T+  S ETS   Q L++ +V+ ++
Sbjct: 912  TGVPILVADINPQMTSSSSNETSHLIQELHSLIVDHFQ 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,657
Number of Sequences: 5004
Number of extensions: 46479
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)