BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1264 (672 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 28 1.4 SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 25 7.5 SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 7.5 SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.9 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.9 >SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 27.9 bits (59), Expect = 1.4 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +2 Query: 305 TAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNS 460 T P NLGN T +S ET ++ QTL + + +S + + E + T L + + Sbjct: 526 TTPKNLGNLTAIS-ETLENGQTLKSNMASSIEKSKTSTEVVASYDTTLDEET 576 >SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pombe|chr 3|||Manual Length = 933 Score = 25.4 bits (53), Expect = 7.5 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +2 Query: 266 RDLEQTVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTL 445 R L + S LPIPT +L L+ + S D +Q N + + +K +++ H L Sbjct: 204 RSLREVGSNLPIPTG--SLTKIDGLNNQLSND--LTRSQTTNIFGFAEKASSFAAAVHKL 259 >SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|||Manual Length = 1369 Score = 25.4 bits (53), Expect = 7.5 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 244 EQR*YKLEGLGTDSEW 291 EQR Y ++GL D+EW Sbjct: 1022 EQREYNMDGLDRDTEW 1037 >SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 871 Score = 25.0 bits (52), Expect = 9.9 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -3 Query: 409 ISPFIAVNQLRVQCLPVL*GFLTQIRGITKIQRSSGYRETTHCLFQVPQVYI 254 I P +A++ L + +P FL + G +Q Y + + FQV QV++ Sbjct: 429 ILPSVALSIL-MSLVPPFIKFLGKFGGALTVQEIENYCQNWYYAFQVVQVFL 479 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.0 bits (52), Expect = 9.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 287 SGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYK 400 +G+PI A +N T+ S ETS Q L++ +V+ ++ Sbjct: 912 TGVPILVADINPQMTSSSSNETSHLIQELHSLIVDHFQ 949 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,458,657 Number of Sequences: 5004 Number of extensions: 46479 Number of successful extensions: 137 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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