Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1264
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)                    31   0.84 
SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)                30   1.5  
SB_35154| Best HMM Match : LTXXQ (HMM E-Value=1.1)                     29   3.4  
SB_46991| Best HMM Match : PE (HMM E-Value=2.6)                        29   4.5  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_23201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_25663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            28   7.9  

>SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
 Frame = +2

Query: 107 LNSALNSLRTLRSSVSHVFETL----SNGLRADHGEDGK-EKFXXXXXXXXXXXXXXXRD 271
           +   L + + LRSS+SHVFE L    ++   ++  E  K  +F                 
Sbjct: 8   IEQCLGATKGLRSSISHVFEGLVEQPADNKSSESAEAAKTSEFVERLKKNLVDVQTSYGA 67

Query: 272 LEQT---VSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIH-EYSSFAH 439
           LE++   VS +      + LGN   L+ +  +D+   Y QL+++Y W +K++ E    A 
Sbjct: 68  LEKSAALVSQVIKSDNSIALGNAGLLTLDPIEDKNRFYGQLLDAYNWHEKLNTEAKQAAA 127

Query: 440 TLLSQNSLKRSYINSGSTKR 499
           +L  Q+       + G  KR
Sbjct: 128 SLKRQHPYAVRRTDDGPIKR 147


>SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)
          Length = 1209

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 269 DLEQTVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNS-YKWTDK 412
           DL Q    +P PT   NL N    S   ++DR T  T+++NS Y+  +K
Sbjct: 221 DLGQEEETIPFPTRVANLVNKYLKSGVETEDRPTRVTEIMNSLYRGRNK 269


>SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)
          Length = 182

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 195 WSARSPLDNVSNTWLTLDRSVRSEFKAEFNCSYVDSLIHFEDLQD 61
           W+  SPL  + + W T+ R+V    +   +CS +  L+ F   Q+
Sbjct: 79  WNRVSPLSRIRDNWATIVRTVMFTTRPNSSCSPLVRLVMFNTRQN 123


>SB_35154| Best HMM Match : LTXXQ (HMM E-Value=1.1)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +2

Query: 410 KIHEYSSF-AHTLLSQNSLKRSYINSGSTKRRGK-----LQSNHNVAPIQVDNVINNIDR 571
           ++H  S   A+  +S +   R  I+ G ++  G       QS  +  P+Q+D V++ +  
Sbjct: 118 RLHAVSDLPANYTVSFDVNHRQLIDQGLSQANGNDLCVFYQSQASEEPVQIDRVVSGLGT 177

Query: 572 SYNDMKITISRPFASNAVVQ 631
           +   +   +  P  SNAV Q
Sbjct: 178 TNATVSFKLQAPLPSNAVNQ 197


>SB_46991| Best HMM Match : PE (HMM E-Value=2.6)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 314 LNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNSLKRSY 475
           LN+ +    ++E ++ +Q   + L +   +    H+Y+ +A   + QN  KRSY
Sbjct: 180 LNVDDPLASAEEKAERKQDFRSTLQDIETYGKMYHDYAVWAKEEIKQNQYKRSY 233


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 341 SQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNSLK 466
           +Q+TS  +QT  TQ   S + T K     +  HT ++Q++ K
Sbjct: 399 TQQTSNTQQTSNTQQTTSMQHTTKTKHKGNSQHTAITQHAEK 440


>SB_23201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 512 QSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQ 631
           QS  +  P+Q+D V++ +  +   +   +  P  SNAV Q
Sbjct: 23  QSQASEEPVQIDRVVSGLGTTNATVSFKLQAPLPSNAVNQ 62


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 326  NTTYLSQETSQDRQTLYTQLVNS---YKWTDKIHEYSSFAHTLLSQNSLKRSYINSGSTK 496
            +TTY ++ TS    TLY +L +S    ++       S+  H  L+ N  +      GS++
Sbjct: 1747 STTYHAKLTSSKSATLYAKLTSSKSATRYAKLTSSKSTTYHAKLTSNDYQLESNELGSSE 1806

Query: 497  RRGKLQSNH 523
            +R  L + H
Sbjct: 1807 QRLSLHALH 1815


>SB_25663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +2

Query: 317 NLGNTTYLSQETSQDRQTLYTQLVNSYKWTDK--IHEYSSFAHTLLSQNSLKRSYINSGS 490
           NL   T  + + S +     T  V  Y  TDK  + E S  +    SQ S+  +  +S S
Sbjct: 156 NLMLMTAWANDNSHNLSVPLTLEVTPYVDTDKSQVQERSELSE---SQQSVSITNEDSAS 212

Query: 491 TKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQINLSHV 649
           TK     +   N +   +D ++N I+  +   + T        AVV ++L+ V
Sbjct: 213 TKTSSVTEDEDNESTSSLDVIVNRIESFFQIQEDTT----RVKAVVHVSLNRV 261


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
 Frame = +2

Query: 275  EQTVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQ 454
            EQ ++ L   T   N+     L Q        +        + T ++++ S  +   L  
Sbjct: 703  EQQLTTLLQETENRNMQARVELEQMLESQMNVVARLKAECQRLTQQLNDLSIKSRKELRD 762

Query: 455  NSLKRSYINS--GSTKRRGK-LQSNHNVAPIQVDNVINNIDRSYNDMKITISR 604
            +  +R  I +   S K +GK L++N       V+N+ N + RS  D+K  I++
Sbjct: 763  SVTERDRIQAQLSSVKSKGKELEANLKKKDQLVENLNNKLKRSETDVKTNITQ 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,913
Number of Sequences: 59808
Number of extensions: 327613
Number of successful extensions: 855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)