Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1264
         (672 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.6  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.6  
AY146727-1|AAO12087.1|  139|Anopheles gambiae odorant-binding pr...    23   6.6  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 390 TAINGLIRFTNTAPS 434
           T +N + RFTN APS
Sbjct: 388 TTLNRIARFTNRAPS 402


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 390 TAINGLIRFTNTAPS 434
           T +N + RFTN APS
Sbjct: 388 TTLNRIARFTNRAPS 402


>AY146727-1|AAO12087.1|  139|Anopheles gambiae odorant-binding
           protein AgamOBP20 protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 62  SCRSSK*IKLST*EQLNSALNSLRTLRSSVSHVFETLSNGLRADHGEDGKE 214
           SC   K I     EQ+  +   +R++    + V E L NGLR     D KE
Sbjct: 10  SCTKKKKIFPLRKEQMMKSGEMIRSVCLGKTKVAEELVNGLRESKFADVKE 60


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,753
Number of Sequences: 2352
Number of extensions: 11415
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)