Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1264
(672 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY075500-1|AAL68310.1| 293|Drosophila melanogaster RE51713p pro... 159 3e-39
AE014297-321|AAF51976.1| 293|Drosophila melanogaster CG1245-PA ... 159 3e-39
AY060675-1|AAL28223.1| 572|Drosophila melanogaster GH10780p pro... 29 7.6
AJ011924-1|CAA09869.1| 2396|Drosophila melanogaster Kakapo protein. 29 7.6
AF200425-1|AAF24343.1| 5201|Drosophila melanogaster Short stop/K... 29 7.6
AE014134-149|AAF51460.1| 572|Drosophila melanogaster CG3544-PA ... 29 7.6
AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-P... 29 7.6
AE013599-1789|AAM68561.1| 5201|Drosophila melanogaster CG18076-P... 29 7.6
>AY075500-1|AAL68310.1| 293|Drosophila melanogaster RE51713p
protein.
Length = 293
Score = 159 bits (386), Expect = 3e-39
Identities = 81/190 (42%), Positives = 119/190 (62%)
Frame = +2
Query: 101 EQLNSALNSLRTLRSSVSHVFETLSNGLRADHGEDGKEKFXXXXXXXXXXXXXXXRDLEQ 280
++LNS L +++ LRS+V FE L++G + GE+ + KF R++EQ
Sbjct: 2 DKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFAAINSQIREVEQ 61
Query: 281 TVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNS 460
++GLP+P P +LGNT YL+QETSQDRQ LY QLVNSYKW DK+H++S A L+QN+
Sbjct: 62 LINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSYKWMDKVHDHSFLAFNNLNQNT 121
Query: 461 LKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQINL 640
L+RSY N S KR+ S+ N P +D +++ I+ + I RPF +NAV + +
Sbjct: 122 LRRSY-NYCSQKRQRLPFSSFNNDPDHIDKLLSEINTPPH-TSYRIFRPFGTNAVTIVTI 179
Query: 641 SHVLKAVVAF 670
S+V+KA + F
Sbjct: 180 SNVMKAAIVF 189
>AE014297-321|AAF51976.1| 293|Drosophila melanogaster CG1245-PA
protein.
Length = 293
Score = 159 bits (386), Expect = 3e-39
Identities = 81/190 (42%), Positives = 119/190 (62%)
Frame = +2
Query: 101 EQLNSALNSLRTLRSSVSHVFETLSNGLRADHGEDGKEKFXXXXXXXXXXXXXXXRDLEQ 280
++LNS L +++ LRS+V FE L++G + GE+ + KF R++EQ
Sbjct: 2 DKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFAAINSQIREVEQ 61
Query: 281 TVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNS 460
++GLP+P P +LGNT YL+QETSQDRQ LY QLVNSYKW DK+H++S A L+QN+
Sbjct: 62 LINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSYKWMDKVHDHSFLAFNNLNQNT 121
Query: 461 LKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQINL 640
L+RSY N S KR+ S+ N P +D +++ I+ + I RPF +NAV + +
Sbjct: 122 LRRSY-NYCSQKRQRLPFSSFNNDPDHIDKLLSEINTPPH-TSYRIFRPFGTNAVTIVTI 179
Query: 641 SHVLKAVVAF 670
S+V+KA + F
Sbjct: 180 SNVMKAAIVF 189
>AY060675-1|AAL28223.1| 572|Drosophila melanogaster GH10780p
protein.
Length = 572
Score = 28.7 bits (61), Expect = 7.6
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 266 RDLEQTVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTL 445
R++E TV G P + + G+ Y ++ T + +YTQ Y+ T +I SSF +L
Sbjct: 152 REMEHTVGG-PAELSKIT-GSRAY-TRFTGPQIRKVYTQCPEQYERTSRISLISSFLASL 208
Query: 446 L 448
L
Sbjct: 209 L 209
>AJ011924-1|CAA09869.1| 2396|Drosophila melanogaster Kakapo protein.
Length = 2396
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 192 SARSPLDNVSNTWLTLDRSVRSEFKAEFNCSYVDSLIHFEDLQDRLKTKSF 40
SA SPL S++ ++ S +A+ Y D+L F+D +D ++ K+F
Sbjct: 104 SASSPLYENSSSPAAPKKAKHSSTQAQPQGGYEDALTQFKDERDAIQKKTF 154
>AF200425-1|AAF24343.1| 5201|Drosophila melanogaster Short
stop/Kakapo long isoform protein.
Length = 5201
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 192 SARSPLDNVSNTWLTLDRSVRSEFKAEFNCSYVDSLIHFEDLQDRLKTKSF 40
SA SPL S++ ++ S +A+ Y D+L F+D +D ++ K+F
Sbjct: 104 SASSPLYENSSSPAAPKKAKHSSTQAQPQGGYEDALTQFKDERDAIQKKTF 154
>AE014134-149|AAF51460.1| 572|Drosophila melanogaster CG3544-PA
protein.
Length = 572
Score = 28.7 bits (61), Expect = 7.6
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 266 RDLEQTVSGLPIPTAPLNLGNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTL 445
R++E TV G P + + G+ Y ++ T + +YTQ Y+ T +I SSF +L
Sbjct: 152 REMEHTVGG-PAELSKIT-GSRAY-TRFTGPQIRKVYTQCPEQYERTSRISLISSFLASL 208
Query: 446 L 448
L
Sbjct: 209 L 209
>AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-PA,
isoform A protein.
Length = 5501
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 192 SARSPLDNVSNTWLTLDRSVRSEFKAEFNCSYVDSLIHFEDLQDRLKTKSF 40
SA SPL S++ ++ S +A+ Y D+L F+D +D ++ K+F
Sbjct: 104 SASSPLYENSSSPAAPKKAKHSSTQAQPQGGYEDALTQFKDERDAIQKKTF 154
>AE013599-1789|AAM68561.1| 5201|Drosophila melanogaster CG18076-PE,
isoform E protein.
Length = 5201
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 192 SARSPLDNVSNTWLTLDRSVRSEFKAEFNCSYVDSLIHFEDLQDRLKTKSF 40
SA SPL S++ ++ S +A+ Y D+L F+D +D ++ K+F
Sbjct: 104 SASSPLYENSSSPAAPKKAKHSSTQAQPQGGYEDALTQFKDERDAIQKKTF 154
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,331,364
Number of Sequences: 53049
Number of extensions: 469948
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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