Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1264
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical
           protein T25D10.1 protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
 Frame = +2

Query: 272 LEQTVSGLPIPTA---PLNLGNTTYLSQETSQDRQTLYTQLVN-----SYKWTDKIHE-- 421
           L+Q +  +  PTA    L + N++Y    T     T  + +V      S+K+ D +    
Sbjct: 103 LQQFLIAIEPPTAVNRELGIENSSYEDPLTKFSEDTSSSLMVKGNGFKSFKYFDNLRSDI 162

Query: 422 ----YSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMK 589
                      L +QN + +S  N+        L+SN N +   +  ++N+    Y D+ 
Sbjct: 163 RLWVLEDAESVLEAQNLITKSQRNNFKICVHATLESNKNCSVKAIAQILNHYTNEYEDVM 222

Query: 590 ITISRPF 610
           + I+ PF
Sbjct: 223 LIIASPF 229


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/78 (20%), Positives = 37/78 (47%)
 Frame = +2

Query: 416 HEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKIT 595
           H Y  F   L +  + ++ Y+++  + R GK+  + +   + V   ++N D    D  +T
Sbjct: 79  HSYRKFVIPLSTDTNKQKQYLSAARSVRLGKILEDLDHMAVHV-AYVHNSDNGTLDEPMT 137

Query: 596 ISRPFASNAVVQINLSHV 649
           + R   + +V +I+   +
Sbjct: 138 LPRTIVTASVKRIDFHDI 155


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/78 (20%), Positives = 37/78 (47%)
 Frame = +2

Query: 416 HEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKIT 595
           H Y  F   L +  + ++ Y+++  + R GK+  + +   + V   ++N D    D  +T
Sbjct: 34  HSYRKFVIPLSTDTNKQKQYLSAARSVRLGKILEDLDHMAVHV-AYVHNSDNGTLDEPMT 92

Query: 596 ISRPFASNAVVQINLSHV 649
           + R   + +V +I+   +
Sbjct: 93  LPRTIVTASVKRIDFHDI 110


>AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical
           protein Y105E8A.6 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 83  IKLST*EQLNSALNSLRTLRSSVSHVFETLSNGLRADHGEDGKEK 217
           +KL   ++ N+  ++L  L   V+   E L  G R   GEDG +K
Sbjct: 147 VKLKQDQRQNAVTDTLAALVYDVNATTEVLRRGQRGRDGEDGNKK 191


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 404 TDKIHEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYND 583
           +D I  Y+ F +  L  +S    Y  +G  +  GK+Q+N N     V  ++N  +  + +
Sbjct: 162 SDGISTYAIFRYESLPWSSSMGYYAQAGFVRSIGKIQTNVNSGGPDVKELVNLSNNQFGN 221

Query: 584 MKI 592
             I
Sbjct: 222 FFI 224


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical protein
            R09A8.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +2

Query: 323  GNTTYLSQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTL-LSQNSLKRSYINSGSTKR 499
            G+   LS+   Q+R   + Q        D  +E +SF H+L +  N    S   +  T  
Sbjct: 742  GSKESLSKRMEQERMKQFWQKEKHESSRDDANENASFVHSLDVESNVDSCSSTGTQETSE 801

Query: 500  RGKLQSNHNVAPIQVDNVINNI-DRSYNDMK 589
            + + ++   V P    N+   + D+S N +K
Sbjct: 802  KKRQENVLAVVPYNPKNISTLVEDQSSNTLK 832


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,712
Number of Sequences: 27780
Number of extensions: 254283
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)