Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1264
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17760.2 68418.m02083 AAA-type ATPase family protein contains...    30   1.6  
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    30   1.6  
At4g37750.1 68417.m05344 ovule development protein aintegumenta ...    29   3.7  
At3g06150.1 68416.m00707 expressed protein                             28   4.9  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   6.5  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    27   8.6  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    27   8.6  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    27   8.6  

>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 341

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 341 SQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNSLKRSYI 478
           ++E   +R+ L    +NS +W   I E+ S   T+  ++ LKR  I
Sbjct: 187 AKEIRDERRILMLHSLNSLRWESVILEHPSTFETMAMEDDLKRDVI 232


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 341 SQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNSLKRSYI 478
           ++E   +R+ L    +NS +W   I E+ S   T+  ++ LKR  I
Sbjct: 187 AKEIRDERRILMLHSLNSLRWESVILEHPSTFETMAMEDDLKRDVI 232


>At4g37750.1 68417.m05344 ovule development protein aintegumenta
           (ANT) identical to ovule development protein
           aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
          Length = 555

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 289 WSPDTHC--SAESW*YHVFESRNLTRQANIVH 378
           W P TH   SAE++   + + +N+TRQ  + H
Sbjct: 340 WGPSTHTNFSAENYQKEIEDMKNMTRQEYVAH 371


>At3g06150.1 68416.m00707 expressed protein 
          Length = 594

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 195 WSARSPLDNVSNTWLTLDRSVRSEFKAEFNCSYVDSLIHFEDLQ 64
           W +R P+ +  N   +    V  EF  +FN + +    H++ L+
Sbjct: 199 WKSRPPVKDFGNGTYSFSLQVHPEFAGDFNLTVILLFRHYQGLK 242


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
            MRP-like ABC transporter [Arabidopsis thaliana]
            GI:2316016; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 4    SLEFFCFQIELLETFGFQTIL 66
            ++E+ CF++ELL TF F + L
Sbjct: 1120 AMEWLCFRLELLSTFAFASSL 1140


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 341 SQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNSLKRSYINSGSTKRR-GKLQS 517
           +Q+  Q +Q    Q     +   + H YSS  HT   Q+S K + I  G+ + +  K  +
Sbjct: 413 NQQQQQQKQHQKHQHQQQQQQQHRRH-YSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVA 471

Query: 518 NHNVAPIQV-DNVINNIDRSYNDMKITISRPF 610
                PI+  D + NN  ++ +    ++S P+
Sbjct: 472 KPKPKPIESGDQMNNNTQQNLHYRSHSVSYPY 503


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 341 SQETSQDRQTLYTQLVNSYKWTDKIHEYSSFAHTLLSQNSLKRSYINSGSTKRR-GKLQS 517
           +Q+  Q +Q    Q     +   + H YSS  HT   Q+S K + I  G+ + +  K  +
Sbjct: 351 NQQQQQQKQHQKHQHQQQQQQQHRRH-YSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVA 409

Query: 518 NHNVAPIQV-DNVINNIDRSYNDMKITISRPF 610
                PI+  D + NN  ++ +    ++S P+
Sbjct: 410 KPKPKPIESGDQMNNNTQQNLHYRSHSVSYPY 441


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 620 HYLQMVLIW*FSYRYRICLCC 558
           H LQ+VL W  +++ R C CC
Sbjct: 209 HSLQLVLWWVSNFQKRKCYCC 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,790
Number of Sequences: 28952
Number of extensions: 225092
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)