Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1262
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.53 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   4.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.9  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.6  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 471 KEIPNEVDNEKTCVAC 518
           KE+P E  N +TCV C
Sbjct: 503 KEVPGETINLQTCVRC 518


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 514 HAWRKYYNLVFFSVAI 561
           H WR+ +N+V F  A+
Sbjct: 380 HRWRQIFNMVGFRNAV 395


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 514 HAWRKYYNLVFFSVAI 561
           H WR+ +N+V F  A+
Sbjct: 381 HRWRQIFNMVGFRNAV 396


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 514 HAWRKYYNLVFFSVAI 561
           H WR+ +N+V F  A+
Sbjct: 381 HRWRQIFNMVGFRNAV 396


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 147  RRFVNHVGKKIETN 188
            RRF+ HV   IETN
Sbjct: 1922 RRFIAHVVDFIETN 1935


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,681
Number of Sequences: 336
Number of extensions: 2987
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)