BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1262 (633 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 40 4e-04 SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 40 4e-04 SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 37 0.002 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 35 0.011 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.015 SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 33 0.026 SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.060 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 32 0.079 SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 31 0.18 SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.32 SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 0.97 SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 28 1.3 SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 2.3 SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 3.9 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.2 SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 26 5.2 SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 5.2 SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 5.2 SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.9 SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 6.9 SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 6.9 SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 25 6.9 SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 9.1 SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 25 9.1 SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 25 9.1 >SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 306 Score = 39.5 bits (88), Expect = 4e-04 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 450 KKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYG 587 ++ L+ ++P + + C C+E I P +CGHIFC C G Sbjct: 237 ERDLEDKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSCING 282 >SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 486 Score = 39.5 bits (88), Expect = 4e-04 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Frame = +3 Query: 303 PLQIGKNLTGIDYVHVRPAATASYAHLNLLGYITLLHAFVCCGQSVYLAKKHLDQLKEIP 482 PL++ + + D + P T++ + LL H + S A ++++ Sbjct: 102 PLELKEEICHDDCLSSSPPCTSALTEITLLP--PTFHNLIPSSSSYETAVAEFLHMEDLL 159 Query: 483 NE-VDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL 593 E V E C C + P V CGH FC C AL Sbjct: 160 QENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQAL 197 >SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 732 Score = 37.1 bits (82), Expect = 0.002 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +3 Query: 459 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578 +D KE +E +E+ C C E I CVL C H CH C Sbjct: 67 VDASKEEQDE--DEQICFICAEGITYSCVLPCNHRMCHVC 104 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 34.7 bits (76), Expect = 0.011 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = +3 Query: 450 KKHLDQLKE-IPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALK--TVVHWCRT 620 +++L L E I + ++ + C+ C + I Q + CGH++C C LK + C+T Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKT 1131 Query: 621 PFTK 632 K Sbjct: 1132 KLNK 1135 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 34.3 bits (75), Expect = 0.015 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +3 Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALK 596 L E ++ C C E + +P CGH +C++C LK Sbjct: 72 LLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLK 114 >SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 269 Score = 33.5 bits (73), Expect = 0.026 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTP 623 CV CL+ CGHIFC+ C AL T + P Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCP 244 >SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1133 Score = 32.3 bits (70), Expect = 0.060 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Frame = +3 Query: 402 TLLHAFVCCGQSVYLAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCC 581 +L++ FV G+ + +D LK + C C E I P +L C H C C Sbjct: 845 SLINQFVVTGKPIPSDILKIDTLKSFEALITECPIC--CNEPIQNPLLLNCKHACCGDCL 902 Query: 582 -----YGALKTVV----HWCRTPFTK 632 Y + ++ H CR PF + Sbjct: 903 SEHIQYQKRRNIIPPLCHTCRQPFNE 928 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 31.9 bits (69), Expect = 0.079 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578 C+ C ++ P CGH FC QC Sbjct: 254 CLICKKDYRSPIATTCGHHFCEQC 277 >SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pombe|chr 2|||Manual Length = 387 Score = 30.7 bits (66), Expect = 0.18 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Frame = +3 Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALK--TVVHWCRTP 623 +D+ C+ C E P + C H FC C L+ + CR P Sbjct: 23 LDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAP 69 >SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 456 Score = 29.9 bits (64), Expect = 0.32 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = +3 Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWC 614 C C +P L C H+FC C K V +C Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFC 395 >SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 251 Score = 28.3 bits (60), Expect = 0.97 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Frame = +3 Query: 477 IPNEVDNEKTCVACLEE---ILQPCVLQCGHIFCHQCCYGALKTV 602 +P E CV +E I P CGH +C+ C LK V Sbjct: 185 VPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLV 229 >SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 559 Score = 27.9 bits (59), Expect = 1.3 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = -1 Query: 483 WEFLLIGPNVFSLSKHFVRSIQMHAVMLCSLVNL--NEHMKQLQQV*HEHNQCQSDFYLS 310 W+ + PN F ++ F+R + H + C + N ++ Q H +C D++LS Sbjct: 452 WQIMDQFPNCFEFNERFLRRLLYH-LYSCQYGSFLYNSERERAQASVSTHTRCIWDYFLS 510 Query: 309 VK 304 K Sbjct: 511 RK 512 >SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 673 Score = 27.1 bits (57), Expect = 2.3 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +3 Query: 507 CVACLEEI-LQPCVLQCGHIFCHQCCYGALKT 599 C CLEE + + +CGH++C C ++T Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVET 245 >SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosaccharomyces pombe|chr 3|||Manual Length = 680 Score = 26.2 bits (55), Expect = 3.9 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 507 CVACLEEILQPCVLQ-CGHIFCHQCCYGALKTVVHWC 614 C C E + ++ CGH FC+QC ++T C Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRC 663 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 25.8 bits (54), Expect = 5.2 Identities = 8/20 (40%), Positives = 15/20 (75%) Frame = -1 Query: 540 KVVIFPPSMQHMSFRYPLHW 481 K++ + ++Q +SF +PLHW Sbjct: 694 KLIEYDIALQPVSFHHPLHW 713 >SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosaccharomyces pombe|chr 3|||Manual Length = 232 Score = 25.8 bits (54), Expect = 5.2 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Frame = +3 Query: 483 NEVD-NEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTPF 626 NE + N C AC E ++ V CG+ CC C TP+ Sbjct: 175 NEYESNLYECNACREIVIAGYVCDCGYCLHVYCCKHLAHVNCINCNTPW 223 >SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosaccharomyces pombe|chr 1|||Manual Length = 811 Score = 25.8 bits (54), Expect = 5.2 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +3 Query: 81 KLPSYY-ARLASVLLSTFGENLT--RRFVNHVGKKIETNRSLRSEAQDLFLIAVKTLGDV 251 K+ Y+ A L S+++ G + R VN + I + D+F V LGD Sbjct: 581 KIMGYFSAYLMSIVIPFTGVTASSRRETVNILSSSISV---IECAVNDVFYATVHALGDH 637 Query: 252 LPQIQSIHRALSY 290 L I S +R +SY Sbjct: 638 LEIILSPYRQISY 650 >SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 25.8 bits (54), Expect = 5.2 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 33 LGEEYSGIVQVDDSYHKLPSYYARLASVLLSTFGENLTRRFVNH 164 +GE S ++V + +KLP Y A++ L T +L RR+V + Sbjct: 247 IGEGASSFIRVINDRNKLPIYVAKVFRPPLDT---SLLRRYVRY 287 >SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|Schizosaccharomyces pombe|chr 1|||Manual Length = 2397 Score = 25.4 bits (53), Expect = 6.9 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +1 Query: 505 HVLHAWRKYYNLVFFSVAIYSAINVAMAHLKQ 600 H +H W + ++ F VAI+ A+ +A L + Sbjct: 2214 HNVHKWAMFLLVILFYVAIWIALVALLASLSR 2245 >SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 Brl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 692 Score = 25.4 bits (53), Expect = 6.9 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%) Frame = +3 Query: 552 CGHIFCHQCC---YGALKTVVHWCRTPFT 629 CGH FC C Y + C TPF+ Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETPFS 683 >SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 205 Score = 25.4 bits (53), Expect = 6.9 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 9/55 (16%) Frame = +3 Query: 495 NEKTCVACLEEILQP-----CVLQCGHIFCHQCCYG-ALKTV---VHWCRTPFTK 632 N C C E++ +CGH+FC C KTV V CR TK Sbjct: 143 NNIACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITK 197 >SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 247 Score = 25.4 bits (53), Expect = 6.9 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +1 Query: 511 LHAWRKYYNLVFFSVAIYSAINVAMAHLKQ 600 ++ WRK +++ FFSV + A+ HL++ Sbjct: 100 INEWRKLFDINFFSVV--ETVKYAIPHLRK 127 >SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr 2|||Manual Length = 279 Score = 25.0 bits (52), Expect = 9.1 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = +3 Query: 552 CGHIFCHQCCYGALKTVV 605 CG +FC+ CC K V Sbjct: 52 CGKLFCYNCCNSFAKLPV 69 >SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces pombe|chr 1|||Manual Length = 417 Score = 25.0 bits (52), Expect = 9.1 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 120 IIRLLNVR-SNLAVCGSYHLLGRFQSTLRLE 31 I+RL + S++ VCGS +LLG L+L+ Sbjct: 386 ILRLAKEKNSSVIVCGSLYLLGDMYRYLKLD 416 >SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 25.0 bits (52), Expect = 9.1 Identities = 9/34 (26%), Positives = 18/34 (52%) Frame = -1 Query: 519 SMQHMSFRYPLHWEFLLIGPNVFSLSKHFVRSIQ 418 ++QH FRY W + P + SL + + +++ Sbjct: 177 ALQHCGFRYNDKWAKRVKEPKLMSLMSYIITTVE 210 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,565,228 Number of Sequences: 5004 Number of extensions: 50851 Number of successful extensions: 164 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 281707720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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