Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1262
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 40 0.001
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 39 0.004
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 38 0.007
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 38 0.009
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 38 0.009
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 37 0.012
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12) 37 0.012
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 37 0.016
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 36 0.027
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 36 0.027
SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18) 36 0.027
SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 36 0.036
SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 36 0.036
SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 36 0.036
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 36 0.036
SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15) 36 0.036
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 35 0.048
SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 35 0.048
SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 35 0.048
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 35 0.048
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 35 0.063
SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 35 0.063
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 35 0.063
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09) 35 0.063
SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17) 34 0.083
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 34 0.083
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 34 0.083
SB_13054| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 33 0.15
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 33 0.15
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 33 0.15
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18) 33 0.19
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10) 33 0.25
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 33 0.25
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 32 0.34
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 32 0.45
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048) 31 0.59
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.0
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 30 1.4
SB_20928| Best HMM Match : NHL (HMM E-Value=0) 30 1.8
SB_24396| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 29 2.4
SB_10780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 29 2.4
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.1
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.1
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 29 3.1
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.1
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14) 29 4.1
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 29 4.1
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 28 5.5
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 28 5.5
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 28 5.5
SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12) 28 7.2
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 28 7.2
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17) 28 7.2
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21) 28 7.2
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 28 7.2
SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23) 27 9.6
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVVH--WCRTPFTK 632
C C +L+P CGH FC C Y +L V CR P TK
Sbjct: 330 CKLCFNLLLEPVTSLCGHSFCRDCLYRSLDHRVECPCCRAPLTK 373
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYG-ALKT-VVHWCRTPFT 629
E+D + C CL++ P L CGH+FC C G AL++ CR P +
Sbjct: 64 ELDYQPDCPVCLQQASYPVRLPCGHMFCFLCIKGVALRSRKCAICRQPIS 113
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+V E TC CLE+ +P +L C H FC +C
Sbjct: 15 KVREELTCSVCLEQFREPKMLPCFHTFCKEC 45
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 477 IPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYG 587
I + E C CLE P VL C H FC++C G
Sbjct: 6 IEERLQKEVECPICLERFKDPRVLPCLHTFCYECLVG 42
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 507 CVACLEEILQPCVLQ-CGHIFCHQCCYGALKT--VVHWCRTPF 626
C CLE I P LQ CGH FC C A K+ + CR PF
Sbjct: 678 CPICLETITYPETLQGCGHTFCRPCITEASKSSKLCPTCRDPF 720
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 507 CVACLEEILQPCVLQ-CGHIFCHQCCYGALKT--VVHWCRTPF 626
C CLE I P LQ CGH FC C A K+ + CR PF
Sbjct: 753 CPICLETITYPETLQGCGHTFCRPCITEASKSSKLCPTCRDPF 795
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 471 KEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALK 596
K + E+++E +C+ C E ++ L C H FC C L+
Sbjct: 359 KSVVEEMEDEFSCIVCQELFIRATTLTCSHSFCEYCLQSWLR 400
>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
Length = 203
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 477 IPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYG 587
I + E C CLE P VL C H FC++C G
Sbjct: 6 IVERLQKEVECPICLERFKDPRVLPCLHTFCYECLVG 42
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 36.7 bits (81), Expect = 0.016
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
++++E TC C+E P +L C H FC C
Sbjct: 8 QLEDEVTCAICIEHFTDPRLLPCLHTFCRHC 38
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 480 PNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
PN V ++ TC CLE+ P VL C H +C C
Sbjct: 18 PNNV-SDVTCSLCLEQYQDPRVLACLHTYCRHC 49
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 35.9 bits (79), Expect = 0.027
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
+CV C +L PC L CGH C +C
Sbjct: 100 SCVRCCGILLGPCTLPCGHTVCEKC 124
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +3
Query: 498 EKTCVACLEEILQPCVLQCGHIFCHQC 578
E C C P CGH+FC C
Sbjct: 376 EFECTLCCRLFYNPVTTPCGHVFCRAC 402
>SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18)
Length = 316
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E + P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHLNDPRVLPCLHSFCRHC 38
>SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 442
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 291
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 89
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15)
Length = 405
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 8 LEDEVTCSICIEHFNDPRVLPCFHSFCRHC 37
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSLCIEHFNDPRVLPCFHSFCRHC 38
>SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSLCIEHFNDPRVLPCLHSFCRHC 38
>SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 119
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSLCIEHFNDPRVLPCLHSFCRHC 38
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 129 LEDEVTCSLCIEHFNDPRVLPCLHSFCRHC 158
>SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 35.1 bits (77), Expect = 0.048
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 474 EIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKT 599
E PN + C CL+ + CGH+FC C + L+T
Sbjct: 52 EDPNSANANFECNICLDTARDAVISMCGHLFCWPCLHRWLET 93
>SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 463
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHW 611
V+++ C C + P V CGH+FC QC +VHW
Sbjct: 51 VEDDFKCGICFGVLEDPLVTTCGHVFCSQC-------LVHW 84
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 8 LEDEVTCSICIEHFNDPRVLPCLHSFCRHC 37
>SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 82
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+ +E TC C+E P VL C H FC C
Sbjct: 9 LQDEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
++ E TC C+E P VL C H FC C
Sbjct: 9 LEGEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 34.7 bits (76), Expect = 0.063
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC CL+ +++P VL C H FC C
Sbjct: 36 TCPICLQLLVEPVVLPCEHEFCKMC 60
>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
Length = 589
Score = 34.7 bits (76), Expect = 0.063
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 450 KKHLDQLKEIPNEVDNEKTCVACLEEILQPCVL-QCGHIFCHQCCYG 587
KK K + +++E +C CLE+ L+P L C H C +C G
Sbjct: 4 KKREKAEKTLSGVINDECSCPVCLEDFLEPKSLPNCAHNVCRKCLEG 50
>SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)
Length = 455
Score = 34.3 bits (75), Expect = 0.083
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E TC C+E P VL C H FC C
Sbjct: 9 LEDEVTCSICIEHFNDPRVLPCFHSFCLHC 38
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 480 PNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
P +V ++ TC CLE+ P VL C H +C C
Sbjct: 9 PKDV-SDVTCSLCLEQYQDPRVLACLHTYCRHC 40
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 480 PNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
P +V ++ TC CLE+ P VL C H +C C
Sbjct: 9 PKDV-SDVTCSLCLEQYQDPRVLACLHTYCRHC 40
>SB_13054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 498 EKTCVACLEEILQP-CVLQCGHIFCHQC 578
E TC CLEE+ +P C+ C H C C
Sbjct: 14 ELTCPVCLEELKEPKCLTSCAHNVCKPC 41
>SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+ +E TC C+E P VL C H FC C
Sbjct: 14 LQDEVTCSICIEHFDDPRVLPCLHSFCRHC 43
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQCC 581
++ CV C EEI V +C H C++CC
Sbjct: 9 ESSNLCVVCCEEIEFSAVGKCDHPVCYKCC 38
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC CLE+ P VL C H +C C
Sbjct: 15 TCCLCLEQYQDPRVLACLHTYCRHC 39
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC CLE+ P VL C H +C C
Sbjct: 15 TCCLCLEQYQDPRVLACLHTYCRHC 39
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQCC 581
++ CV C EEI V +C H C++CC
Sbjct: 9 ESSNLCVVCCEEIEFSAVGKCDHPVCYKCC 38
>SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18)
Length = 355
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++E C C+E P VL C H FC C
Sbjct: 9 LEDEVRCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
Length = 691
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 480 PNEVDNEK-TCVACLEEILQPCVLQCGHIFCHQC 578
P E D + TC+ CL+ P +L C H +C +C
Sbjct: 6 PQEKDEKDVTCLLCLDIFTDPRLLPCLHTYCKKC 39
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 32.7 bits (71), Expect = 0.25
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 495 NEKTCVACLEEILQPCVLQCGHIFCHQCC 581
N+ TC C++ + CGH++C Q C
Sbjct: 402 NDLTCQICMDAEVNTAFCPCGHVYCCQTC 430
>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 465 QLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
Q+ I + + E C C + +P +L+C H FC++C
Sbjct: 84 QMASILDSLRQEAECSLCHKTPSEPKILKCFHTFCNEC 121
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
L+ + V +E C C + L P V CGH+ C +C
Sbjct: 5 LEYFDDPVPSEFLCSYCRKVYLHPLVTGCGHVLCTKC 41
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 32.3 bits (70), Expect = 0.34
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E + +P +L+C H++C +C
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKC 37
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 459 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
++QL ++ + +E+ C CL+ + P + +C H+FC C
Sbjct: 50 INQLLQVLSSGVSEE-CPICLDPLDDPSITRCAHVFCTGC 88
>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 32.3 bits (70), Expect = 0.34
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 126 TFGENLTRRFVNHVGKKIETNRSLRSEAQDLFLIAVKTLGDVLPQIQSIHRAL---SYIC 296
+F ENL R + K + S+ + AQ++F A D++ ++ + S +C
Sbjct: 48 SFIENLVSRTIKSGFKALYGKNSVGA-AQEMFCKATLDATDIIDPMKKSDLIITDSSMMC 106
Query: 297 GGPLQIGKNLTGIDYVHVRPAATASYAH 380
G L N+T +DY + P+ + Y +
Sbjct: 107 GAVLAEYLNITRVDYCSIAPSLSTMYQY 134
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 498 EKTCVACLEEILQPCVL-QCGHIFCHQCCYGALK 596
E +C CLE +P VL CGH C QC K
Sbjct: 20 EISCPVCLEVFEEPLVLPSCGHSVCLQCLQNMTK 53
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 480 PNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
P +V ++ TC CL + P VL C H +C C
Sbjct: 9 PKDV-SDVTCSLCLGQYQDPRVLACLHTYCRHC 40
>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
Length = 233
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVH---WCRTPFTK 632
+V+ CV C + +L P +C H C C + K V +CRT K
Sbjct: 98 KVEELFACVCCQDLVLYPVTTKCLHNICKGCLQRSFKAEVFTCPYCRTDLGK 149
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 495 NEKTCVACLEEILQPCVLQCGHIFCHQC 578
+E C CL+E +P L C H C +C
Sbjct: 17 DELLCPICLDEFKEPKTLSCMHDLCRKC 44
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C CL E P +L+C H FC +C
Sbjct: 20 CPVCLGEYKNPMLLRCYHSFCLRC 43
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 477 IPNEVDNEKT-CVACLEEILQPCVLQCGHIF-CHQC 578
IP+ +N+ T CV CLE +L CGH+ C C
Sbjct: 527 IPDMDENQGTQCVICLENQRNVVLLNCGHVCSCRTC 562
>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCC 581
L+E +++++ C C++E + ++ CGH+ C + C
Sbjct: 133 LQEKLSKLEDGLRCKVCMDEQINAVLIPCGHMVCCEQC 170
>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 483 NEVDNEKT---CVACLEEILQPCVLQCGHI-FCHQCCYGAL 593
NEVD++ CV C+ + +L C H+ C C + AL
Sbjct: 238 NEVDDDDNVLECVICMSDFRDTLILPCRHLCLCKACAFHAL 278
>SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 280
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 396 SLVNLNEHMK-QLQQV*HEHNQCQSDFYLSVKVLRRCKIMPCE 271
S + L +HM +++ H+ NQC +FY + R +I CE
Sbjct: 15 SAIGLKQHMTFHVEKKSHKCNQCDMEFYTRGDLTRHLRIHSCE 57
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQ-CGHIFCHQC 578
++++ C AC E+ P L CGH++C C
Sbjct: 1946 EDQELCPACFCEVDNPYQLATCGHVYCRGC 1975
>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
Length = 795
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 501 KTCVACLEEILQPCVLQCGHIFCHQC 578
+ C C+ P VL C H FC QC
Sbjct: 13 EVCPKCMNAYENPKVLPCLHTFCSQC 38
>SB_24396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C AC + +P +L C H FC +C
Sbjct: 16 CRACHKVFTEPKILDCLHTFCQKC 39
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
NE + C+ C + P V +C H FC C
Sbjct: 237 NEDNLPFACIMCRKTFKNPVVTKCLHYFCEAC 268
>SB_10780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 465 QLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFC 569
Q E P N++ C C+ + + CGH FC
Sbjct: 86 QAPEPPRAFSNDRQCPVCITDARFLTMTNCGHEFC 120
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 501 KTCVACLEEILQPC---VLQCGHIFCHQCCYGALK--TVVHWCRTPFTK 632
K+C CLEE +L CGH +C C L+ T CR P ++
Sbjct: 260 KSCPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCPICRKPTSR 308
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E + QP C H FC C
Sbjct: 160 CAICKEVLTQPIATPCDHYFCVLC 183
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E + QP C H FC C
Sbjct: 34 CAICKEVLTQPIATPCDHYFCVLC 57
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E + QP C H FC C
Sbjct: 160 CAICKEVLTQPIATPCDHYFCVLC 183
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 462 DQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTP 623
+ L++ + E+ C C++ + L CGH+ C C ++ + CR P
Sbjct: 458 ESLQQKLERMQEERLCKICMDAEVGIVFLPCGHLSCCPGCAEGME-LCPMCRAP 510
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E + QP C H FC C
Sbjct: 160 CAICKEVLTQPIATPCDHYFCVLC 183
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C P + CGH FC C
Sbjct: 194 CPLCRRVFKDPVITSCGHTFCQAC 217
>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
Length = 1071
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQCC 581
TC +C E + P +L C C CC
Sbjct: 118 TCPSCKETMNDPVLLPCLDSICRSCC 143
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+++ +VD C C E + + + CGH FC C
Sbjct: 5 VQQFIEKVDPNLLCGICAEVLERAVLTPCGHSFCGVC 41
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQ---CGHIFCHQCCYGALK 596
TC CLE+ +L CG +FC QC LK
Sbjct: 781 TCSLCLEDRTNAMLLTHDGCGRMFCRQCLGVMLK 814
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYG-ALKT 599
C C + +P +L C H FC C G A KT
Sbjct: 62 CRVCNQRFNKPKLLHCLHSFCQSCIEGLARKT 93
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 606 AQLF*VRHSNIDGRIYGHTEEHKVVIFPPSMQHMSFRY 493
A LF +R ++ R+ GHTE V F P+ + RY
Sbjct: 237 AYLFDIRGTSFSHRLTGHTEVVSDVAFHPARPEVLLRY 274
>SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 462 DQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTPFT 629
++LK++ + + + C C++ + CGH+ C C AL CR+ T
Sbjct: 337 EELKKMVWHLQDARICQICMDVEVATAFCPCGHVVCCVEC-SALCKECPLCRSQIT 391
>SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12)
Length = 379
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQCC 581
TC +C E + P +L C C CC
Sbjct: 26 TCPSCKETMNGPVLLPCLDSICRSCC 51
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/37 (27%), Positives = 15/37 (40%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
L + ++D C C+ + CGH FC C
Sbjct: 5 LNKFVGKIDQNLLCNICVGVLENAITTICGHSFCESC 41
>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
Length = 605
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQCC 581
TC +C E + P +L C C CC
Sbjct: 26 TCPSCKETMNGPVLLPCLDSICRSCC 51
>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
Length = 1033
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 582 SNIDGRIYGHTEEHKVVIFPPSMQHMSFRYPLH 484
+N D I+G EEH PP++ ++ YP H
Sbjct: 974 NNDDSEIWGVLEEHYPHNDPPTLTPATYLYPYH 1006
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 507 CVACLEEILQPCVLQ-CGHIFCHQCCY 584
C C + P L CG++FC+ C Y
Sbjct: 1201 CPLCAKVRTNPTALSTCGYVFCYPCIY 1227
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 6 FTTLKDLQTLGEEYSGIVQVDDSYHKLPSYYARLASVLLS 125
F TL+DL E YS V D +H + A+ +LLS
Sbjct: 1083 FITLRDLFRWAERYSKTPDVGDGFHDWEHHLAQDGYMLLS 1122
>SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23)
Length = 581
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E P +L C H FC +C
Sbjct: 145 CPLCHEMFANPRLLPCLHTFCKRC 168
>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E P VL C H FC C
Sbjct: 17 CGICQETYNNPKVLPCLHSFCQNC 40
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +3
Query: 411 HAFVCCGQSVYLAKKHLDQ-----LKEIPNEVDNEKTCVACLEEILQP 539
HAF C G Y KHL+ ++ I N VD+ C+ L P
Sbjct: 802 HAFYCTGVCPYPIAKHLNATNHAIVQTIMNTVDSNVPNACCIPTTLNP 849
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,239,635
Number of Sequences: 59808
Number of extensions: 374580
Number of successful extensions: 1084
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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