Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1262
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.46 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.61 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 530 ITTLCSSVWPYILPSMLLW 586
           +T +C + W +I+ ++LLW
Sbjct: 388 LTVVCLAFWSFIVSTILLW 406


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 66  DDSYHKLPSYYARLASVLLSTFGENLTRRFVNH 164
           DDS+H+L S+     S  +S   ENLT + V++
Sbjct: 218 DDSFHRLSSHTLNHNSDKMSDQQENLTLKEVDN 250


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 270 YFVSVAKHHQESLLQSKRDLGL 205
           YF+S A+HH +   QS  ++G+
Sbjct: 768 YFLSRARHHDDLYSQSYAEVGV 789


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 528 FPPSMQHMSFRYPLHWEFLLIG 463
           FP  +QH++ R+  ++ FL +G
Sbjct: 392 FPDEVQHLARRFLNNYLFLAVG 413


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 104 TCVVTWQFVVAIIYL 60
           TC+  W +V+ +I++
Sbjct: 222 TCIFIWAYVIPLIFI 236


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 104 TCVVTWQFVVAIIYL 60
           TC+  W +V+ +I++
Sbjct: 222 TCIFIWAYVIPLIFI 236


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 514 HAWRKYYNLVFF 549
           H WR+ YN+V F
Sbjct: 382 HRWRQIYNMVRF 393


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 256 GKTSPRVFTAIKKRSWASDLSDRFVSIFF 170
           G+T  R  + I+      D+   F SI+F
Sbjct: 344 GETKSRFISGIRSEQTIFDVKPEFGSIYF 372


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 588 RHSNIDGRIYGHTEEH 541
           RH +    IYGH + H
Sbjct: 795 RHQHAAQMIYGHQQSH 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,549
Number of Sequences: 438
Number of extensions: 3254
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)