Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1262
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 48 7e-06
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 44 6e-05
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 42 3e-04
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 38 0.004
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 38 0.007
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 36 0.017
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 36 0.017
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 36 0.017
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 36 0.017
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 36 0.030
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 36 0.030
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 36 0.030
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 36 0.030
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 35 0.039
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 35 0.039
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 35 0.039
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 35 0.052
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 35 0.052
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 34 0.090
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 34 0.090
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 33 0.12
At2g44410.1 68415.m05523 expressed protein 33 0.12
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 33 0.12
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 33 0.12
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 33 0.12
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 33 0.16
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 33 0.16
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 33 0.16
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 33 0.21
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 33 0.21
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 33 0.21
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 32 0.28
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 32 0.28
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 32 0.28
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 32 0.28
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 32 0.28
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 32 0.28
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 32 0.36
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 31 0.48
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 31 0.48
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 31 0.64
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 31 0.64
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 31 0.64
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 31 0.64
At1g59560.1 68414.m06698 expressed protein contains similarity t... 31 0.64
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 31 0.64
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.64
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 31 0.84
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 31 0.84
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At4g03000.2 68417.m00408 expressed protein contains similarity t... 30 1.1
At4g03000.1 68417.m00407 expressed protein contains similarity t... 30 1.1
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g79190.1 68414.m09233 expressed protein 30 1.1
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 30 1.1
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 30 1.1
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 30 1.1
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 30 1.5
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 30 1.5
At5g57820.1 68418.m07231 hypothetical protein 29 1.9
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 29 1.9
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 29 1.9
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At1g76185.1 68414.m08847 expressed protein 29 2.6
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 29 3.4
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 29 3.4
At1g49560.1 68414.m05557 myb family transcription factor contain... 29 3.4
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 29 3.4
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 29 3.4
At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 28 4.5
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 28 4.5
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 28 4.5
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 4.5
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 28 5.9
At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ... 28 5.9
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 28 5.9
At5g15790.2 68418.m01847 zinc finger (C3HC4-type RING finger) fa... 27 7.8
At5g15790.1 68418.m01846 zinc finger (C3HC4-type RING finger) fa... 27 7.8
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 27 7.8
At3g55530.1 68416.m06166 zinc finger (C3HC4-type RING finger) fa... 27 7.8
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 27 7.8
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ... 27 7.8
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 7.8
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 477 IPN--EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVV 605
+PN E++ + TC CLE + P L+CGHIFC+ C A ++
Sbjct: 219 LPNSIELEYDLTCAICLETVFNPYALKCGHIFCNSCACSAASVLI 263
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC-CYGALKTVVHWCRT 620
+VD + TC CL+ + P L CGHI+C+ C C A VV +T
Sbjct: 224 KVDIDLTCSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKT 269
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 420 VCCGQSVYLAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGH--IFCHQCCYGAL 593
V CGQ + + KH +LK+ D EK C AC+ I C H F H+ C G L
Sbjct: 466 VGCGQIKHFSHKHPLKLKKYNGVRDAEKQCQACILPINSSDFYNCRHCDFFLHEVCAGLL 525
Query: 594 KTVVH 608
+ + H
Sbjct: 526 RKLSH 530
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 38.3 bits (85), Expect = 0.004
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL 593
E+ ++ C CLE + +P VL CGH+ C C + ++
Sbjct: 19 EIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSM 54
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C AC E +++P VL CGH++C C
Sbjct: 192 CSACKELLVRPVVLNCGHVYCEGC 215
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 468 LKEIPNEVD---NEKTCVACLEEILQPCVLQCGHIFCHQCCY 584
+ I NE D N C CLE +P V CGH+FC C Y
Sbjct: 3 INTITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLY 44
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQCCY 584
D+ C CL+ + +P V CGH+FC C +
Sbjct: 43 DSNFDCNICLDSVQEPVVTLCGHLFCWPCIH 73
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQCCY 584
D+ C CL+ + +P V CGH+FC C +
Sbjct: 43 DSNFDCNICLDSVQEPVVTLCGHLFCWPCIH 73
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 36.3 bits (80), Expect = 0.017
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGA 590
+++ +E +C CLE +P CGH FC +C A
Sbjct: 716 DKLRDELSCAICLEICFEPSTTTCGHSFCKKCLRSA 751
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 36.3 bits (80), Expect = 0.017
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 462 DQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+ L + + +++ C C + P V CGHIFC+QC
Sbjct: 664 EDLVSLLSRLESSPICCVCHDPPEDPVVTLCGHIFCYQC 702
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 35.5 bits (78), Expect = 0.030
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL 593
E ++ C CL+ + +P CGH FC C + ++
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSM 224
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 35.5 bits (78), Expect = 0.030
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL 593
E ++ C CL+ + +P CGH FC C + ++
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSM 224
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 35.5 bits (78), Expect = 0.030
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL 593
E ++ C CL+ + +P CGH FC C + ++
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSM 224
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 35.5 bits (78), Expect = 0.030
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL 593
E ++ C CL+ + +P CGH FC C + ++
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSM 224
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 35.1 bits (77), Expect = 0.039
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+++ P V CGH+FC C +
Sbjct: 21 CNICLDQVRDPVVTLCGHLFCWPCIH 46
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVV 605
C CLE L P + CGHIFC C L T V
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCILQYLLTGV 277
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTPFTK 632
N+ + C C E P V CGH+FC C Y L H P K
Sbjct: 20 NDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 69
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTPFTK 632
C C E +P V CGHIFC++C + + C P K
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCK 792
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 34.7 bits (76), Expect = 0.052
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC C + P V CGH+FC++C
Sbjct: 394 TCSVCSDPPKDPVVTLCGHVFCYEC 418
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 33.9 bits (74), Expect = 0.090
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+ P V CGH+FC C Y
Sbjct: 44 CNICLDTAHDPVVTLCGHLFCWPCIY 69
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 33.9 bits (74), Expect = 0.090
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+ P V CGH++C C Y
Sbjct: 141 CYICLDLSKDPVVTNCGHLYCWSCLY 166
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 471 KEIPNEVDNEK-TCVACLEEILQPCVLQCGHIFCHQCCYGAL 593
K + V+ K +C CL Q +CGHIFC +C AL
Sbjct: 114 KAVAPPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNAL 155
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CLE+ P + CGH+FC C Y
Sbjct: 125 CNICLEKAEDPILTCCGHLFCWGCFY 150
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+ P V CGH+FC C Y
Sbjct: 23 CNICLDLAQDPIVTLCGHLFCWPCLY 48
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCY 584
+++ E C CL+ + +P +L C H+FC C +
Sbjct: 18 KLELELKCPLCLKLLNRPVLLPCDHVFCDSCVH 50
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCCY 584
+++ E C CL+ + +P +L C H+FC C +
Sbjct: 18 KLELELKCPLCLKLLNRPVLLPCDHVFCDSCVH 50
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCC--YGALKTVVHWCRTPFT 629
C CL P CGH+FC C + K CRTP T
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTPNT 369
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 9 TTLKDLQTLGEEYSGIVQVDDSYHKLPSYYARLASVLLST 128
TT QTLGEEY I+QV Y P+ R +L T
Sbjct: 84 TTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRALFILYQT 123
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 480 PNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQC 578
P E+ N+ TC+ C EE+ L CGH+F C
Sbjct: 103 PEELSSNDATCIICREEMTSAKKLVCGHLFHVHC 136
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 480 PNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQC 578
P E+ N+ TC+ C EE+ L CGH+F C
Sbjct: 211 PEELSSNDATCIICREEMTSAKKLVCGHLFHVHC 244
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +3
Query: 477 IPNEVDNEKT--CVACLEEILQPCVL---QCGHIFCHQCCYG 587
+P+ V ++KT C C+E+ L V+ +CGH FC+ C G
Sbjct: 109 VPSLVTSKKTMKCDVCMEDDLPSNVMTRMECGHRFCNDCWIG 150
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVL----QCGHIFCHQC 578
L ++P +KTC C ++ + ++ QCGH+FC +C
Sbjct: 140 LIDVPALFHPKKTCTICFDDDINADMMFYIDQCGHMFCSEC 180
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +3
Query: 465 QLKEIPNEVDNEKTCVAC--LEEILQPCV---LQCGHIFCHQC 578
QL E+ N+ ++ + C C + E+ Q CV +CGH FC+ C
Sbjct: 301 QLNELANQ-ESWRQCSKCKHMIELTQGCVRVICRCGHEFCYGC 342
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 459 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCC 581
+D E +E+ + + CV C+ P + CGH+ C + C
Sbjct: 315 VDDEPEDADEIPDGELCVICVSRRRVPAFIPCGHVVCCRRC 355
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E L P V +C H FC C
Sbjct: 312 CFICREPFLDPVVTKCKHYFCEHC 335
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E L P V +C H FC C
Sbjct: 312 CFICREPFLDPVVTKCKHYFCEHC 335
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E++ P +L+C H+FC C
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDC 388
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 578
E N+ C C + C L CGH + C+QC
Sbjct: 814 EASNKSLCAICFDAPRDCCFLPCGHCVSCYQC 845
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 477 IPNEVDNEKTCVACLEEILQPCV--LQCGHIFCHQCCYGALKTVVH 608
+P D+E TC C + + + CGH FC C G + T ++
Sbjct: 127 VPPSDDSELTCGICFDSYPPEKIASVSCGHPFCTTCWTGYISTTIN 172
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+EV + + C C E++ V CGH C QC
Sbjct: 311 SEVSDTELCCICFEQVCTIEVKDCGHQMCAQC 342
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.9 bits (69), Expect = 0.36
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
++D + C C++ I + CGH FC+ C
Sbjct: 45 DLDKDLLCPICMQIIKDAFLTACGHSFCYMC 75
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 31.5 bits (68), Expect = 0.48
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 495 NEKTCVACLEEILQPCVLQCGHIFCHQC 578
N K C CLE P + C H C +C
Sbjct: 1036 NSKECPICLESADDPVLTPCAHRMCREC 1063
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +3
Query: 492 DNEKTCVACLEEILQP----CVLQCGHIFCHQC 578
D++KTC C ++ +P V CGH FC +C
Sbjct: 168 DHDKTCSICSDDNFEPELMFSVALCGHEFCVEC 200
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 31.1 bits (67), Expect = 0.64
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+ +P + CGH++C C Y
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLY 164
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 31.1 bits (67), Expect = 0.64
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+ +P + CGH++C C Y
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLY 164
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 31.1 bits (67), Expect = 0.64
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCY 584
C CL+ +P + CGH++C C Y
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLY 164
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 441 YLAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGH--IFCHQCCYGALKTVVH 608
Y + +H +L++ D EK C AC+ I C H F H+ C G L+ + H
Sbjct: 302 YFSHEHNLKLEKYDAVRDAEKLCQACVCPINSRDFYNCIHCDFFLHEVCAGLLRKLDH 359
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 31.1 bits (67), Expect = 0.64
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKT 599
D CV CL++ ++CGH+ C C L+T
Sbjct: 286 DTPDLCVVCLDQKYNTAFVECGHMCCCTPCSLQLRT 321
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 31.1 bits (67), Expect = 0.64
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 465 QLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALK 596
+L+E N C C + + +++C H+FC QC +L+
Sbjct: 317 RLQEEVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQRSLE 360
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 31.1 bits (67), Expect = 0.64
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C E + P V +C H FC C
Sbjct: 277 CFICREPFVDPVVTKCKHYFCEHC 300
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 69 DSYHKLPSYYARLASVLLSTFGENLTRRFVNHVGKKIETNRSLRSEAQDLFLIAVKTLGD 248
D Y +LPS Y S S + N T R N + + +E N S Q+ +A++ L +
Sbjct: 138 DPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ESSGQETIKLAIRALLE 196
Query: 249 VL 254
V+
Sbjct: 197 VV 198
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 429 GQSVYLAKKHLDQLK-EIPNEVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 578
G+++ + +D+L+ NE + ++ C+ C+++ + L C H + C C
Sbjct: 626 GENIAKLLEEIDKLEGSYDNEANYDRECIICMKDEVSVVFLPCAHQVVCGSC 677
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWC 614
D K CV CL E VL C H+ C AL+ + C
Sbjct: 280 DEGKECVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLC 320
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 578
+++ E+ CV CL E + L C H + C +C
Sbjct: 752 SKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 578
+++ E+ CV CL E + L C H + C +C
Sbjct: 752 SKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C C L P V C H FC +C
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKC 109
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +3
Query: 492 DNEKTCVACLEEILQP----CVLQCGHIFCHQC 578
D+ KTC C + ++P V CGH FC +C
Sbjct: 158 DHNKTCSICSGDNIEPEQIFSVALCGHEFCMEC 190
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 480 PNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQC 578
P E+ ++ TC+ C EE+ L CGH+F C
Sbjct: 282 PEELTASDATCIICREEMTNAKKLICGHLFHVHC 315
>At1g79190.1 68414.m09233 expressed protein
Length = 1274
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 354 PAATASYAHLNLLGYITLLHAFVCCGQSVYLAKKHLDQLKEIPNEVDNE--KTCVACLEE 527
P++ S+ H L + LL A V C + ++ + P V ++ + ++CLEE
Sbjct: 62 PSSLQSFFHYTLFPLLLLLDAAVACRSQ---GQNKPEEFPQTPYRVSDKVAEGVISCLEE 118
Query: 528 ILQPC 542
+L+ C
Sbjct: 119 LLKKC 123
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCV--LQCGHIFCHQCCYGALKTVVH 608
D E C C E L + CGH FC C G + T ++
Sbjct: 123 DGELDCGICFETFLSDKLHAAACGHPFCDSCWEGYITTAIN 163
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQC 578
C CL+ + P GH+FC +C
Sbjct: 43 CSLCLKPFIDPMCCHKGHVFCREC 66
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 578
+V E+ CV CL E + L C H + C +C
Sbjct: 761 KVKRERECVMCLSEEMSVIFLPCAHQVLCFKC 792
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQ-CGHIFCHQC 578
L E P+E++ E C CL E+ L+ C H+FC C
Sbjct: 1553 LGEKPDEIEVE--CPICLSEVDDGYSLEGCSHLFCKAC 1588
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQ-CGHIFCHQC 578
L E P+E++ E C CL E+ L+ C H+FC C
Sbjct: 1550 LGEKPDEIELE--CPICLSEVDDGYSLEGCSHLFCKAC 1585
>At5g57820.1 68418.m07231 hypothetical protein
Length = 161
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 513 ACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTP 623
A L + + CVL CGH++ +C G + + + P
Sbjct: 117 ASLSGLQEACVLSCGHVYHFKCLRGTTLDIDNHSKDP 153
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +3
Query: 498 EKTCVACLEEILQPCVLQCGHIFCHQCCYGALK--TVVHWCRTPF 626
E C CL L C H+FC+ C ++K C+ P+
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPY 392
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +3
Query: 465 QLKEIPNEVDNEKTCVAC--LEEILQPC---VLQCGHIFCHQC 578
+L+++ NE + + C C + E+ C V +CGH FC+QC
Sbjct: 308 RLRDLANE-KSWRQCSKCKHMIELSSGCISVVCRCGHTFCYQC 349
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC C+ + +CGHIFC C
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGC 171
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC C+ + +CGHIFC C
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGC 171
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 504 TCVACLEEILQPCVLQCGHIFCHQC 578
TC C+ + +CGHIFC C
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGC 171
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+ E +C C+ +I CGH FC C
Sbjct: 307 EGELSCCVCMVKIKGASFTPCGHTFCKLC 335
>At1g76185.1 68414.m08847 expressed protein
Length = 106
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 483 WEFLLIGPNVFSLSKHFVRSIQMHAVMLCSLVNLNEHMKQLQQV*H 346
WE +++ VFS + R +Q+ ++LC + L MK +QV H
Sbjct: 47 WELVMLALVVFSAVSLYFRRLQLAFILLCVTLLLLLCMKITKQVRH 92
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCR 617
CV CLE+ + CGH+ C C L T CR
Sbjct: 296 CVICLEQEYNAVFVPCGHMCCCTACSSHL-TSCPLCR 331
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 459 LDQLKEIPNEVDNEKTCVACLEEILQP 539
L+ L+ +P D E+T V CLEE+ P
Sbjct: 200 LEHLEAVPWSEDEEETVVTCLEELHLP 226
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +3
Query: 495 NEKTCVACLEEILQPCVLQCGHIFCHQC 578
N+ C C+ + CGH FC C
Sbjct: 162 NDSVCCVCMGRKKGAAFIPCGHTFCRVC 189
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 552 CGHIFCHQCCYGAL 593
CGH+FC QC Y L
Sbjct: 1008 CGHVFCKQCIYERL 1021
>At1g49560.1 68414.m05557 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 333
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 450 SLSKHFVRSIQMHAVMLCSLVNLNEHMKQLQQV*HEHNQCQSDFYLSVKVL 298
SL F R + M+ V ++ ++EH+K+L++ + CQ + LS+++L
Sbjct: 9 SLGSIFGRGVSMNVV---AVEKVDEHVKKLEEEKRKLESCQLELPLSLQIL 56
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 498 EKTCVACLEEI-LQPCV-LQCGHIFCHQCCYGALKTVVH 608
E TC C + L+ V + CGH FC C G + T ++
Sbjct: 129 EFTCGICFDSYTLEEIVSVSCGHPFCATCWTGYISTTIN 167
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYG 587
+E +E+ C C + V C H+FC C G
Sbjct: 571 DENKSEQECGLCHDPAEDYVVTSCAHVFCKACLIG 605
>At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 450 KKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
KK ++ EI E++ E+ C C+E + + C H C +C
Sbjct: 127 KKDESEMSEI--EIEREEECGICMEMNSKVVLPNCTHSLCIKC 167
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 468 LKEIPNEVDNEKTCVACLEEILQPCVLQC 554
+ EI N++ +EK C A + I CV++C
Sbjct: 169 IPEIANQMASEKECQASVSGIEDDCVVEC 197
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 498 EKTCVACLEEILQPCVLQCGHIFCHQCC--YGALKTVVHWCRTP 623
+ C C PC CGH +C C Y + C+ P
Sbjct: 71 DDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCP 114
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +3
Query: 432 QSVYLAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHW 611
Q +Y +D E NE K CV CL E VL C H+ C L+ +
Sbjct: 220 QEIYGIGNTVDDNGEDANE--RGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNL 277
Query: 612 C 614
C
Sbjct: 278 C 278
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 471 KEIPNEVDNEKTCVACLEEIL--QPCVLQCGHIFCHQCCY 584
+E N + ++ C C EIL Q V QCGH C C +
Sbjct: 1316 QESENLLKRDEACPIC-HEILRNQKMVFQCGHSTCCNCFF 1354
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 504 TCVACLEEI--LQPCVLQCGHIFCHQCCYG 587
+C C+E++ Q + CGH FC+ C G
Sbjct: 123 SCDICVEDVPGYQLTRMDCGHSFCNNCWTG 152
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/32 (31%), Positives = 10/32 (31%)
Frame = +3
Query: 483 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
N C C PC C H FC C
Sbjct: 2 NSPPENDLCSICHSHFTAPCQANCSHWFCGNC 33
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Frame = +3
Query: 498 EKTCVACLE----EILQPCVLQCGHIFCHQCCYGALKTVVHWCRTP 623
E C CL+ E P VL CGH C +C K R P
Sbjct: 3 EPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCP 48
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 489 VDNEKTCVACLEEILQP-CVLQCGHIFCHQCCYGALKTVVHWCRTPF 626
++ K C AC EIL+P L C + C +C K V H C F
Sbjct: 389 LEETKQCKACGTEILKPLSCLVCEYALCIRCA-TLPKKVKHRCDDHF 434
>At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger)
family protein (RHA1b) identical to RING-H2 finger
protein RHA1b [Arabidopsis thaliana] GI:3790567
Length = 157
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 492 DNEKTCVACLEEILQPCVLQ----CGHIFCHQC 578
D E C CL + + ++ CGH+F H+C
Sbjct: 80 DPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRC 112
>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 708
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 456 HLDQLKEIPNEVDNEKTCVACL-----EEILQPCVLQCGHIFCHQCCYGALKTVVH 608
HL +L++ D EK C AC+ + C ++C F H+ C G L+ + H
Sbjct: 416 HLLKLEKYDRVRDAEKQCQACILPINSHDFFYNC-MEC-DFFLHEVCAGLLRKLDH 469
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 459 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 578
+ +L++ +E C AC + + + +C H+FC+ C
Sbjct: 810 IQKLRQELSEFKEILKCKACNDRPKEVVITKCYHLFCNPC 849
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 474 EIPNEVDNEKTCVACLEEILQPC-VLQCGHIFCHQC 578
E + + +C+ C E +L CGH FC+ C
Sbjct: 289 EATEKAPAQVSCIICWTEFSSSRGILPCGHRFCYSC 324
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +3
Query: 507 CVACLEEILQPCVLQCGHIFCHQCCYGALKTVVHWCRTPFTK 632
C C V CGH+FC+QC L + C + K
Sbjct: 919 CGICNVAPKDAVVSLCGHVFCNQCICECLTRDNNQCPLSYCK 960
>At5g15790.2 68418.m01847 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 232
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 492 DNEKTCVACLEEILQ---PCVLQCGHIFCHQCCY 584
D+E C CLEE + V +C H F C Y
Sbjct: 177 DDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIY 210
>At5g15790.1 68418.m01846 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 232
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 492 DNEKTCVACLEEILQ---PCVLQCGHIFCHQCCY 584
D+E C CLEE + V +C H F C Y
Sbjct: 177 DDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIY 210
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 537 PCVLQCGHIFCHQC 578
P +LQCGH FC C
Sbjct: 24 PLLLQCGHGFCKDC 37
>At3g55530.1 68416.m06166 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 273
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 447 AKKHLDQLKEIPNEVDNEKTCVACLEEI 530
A+K LD E ++E TC CLE++
Sbjct: 191 AEKMLDSANESKKGTEDELTCSVCLEQV 218
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 486 EVDNEKTCVACLEEILQPCVLQCGH-IFCHQCC---YGALKTVVHWCRTP 623
E + ++ C+ C+++ + L C H + C C G+ K CR P
Sbjct: 677 EANYDRECLICMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAP 726
>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 580
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 441 YLAKKHLDQLKEIPNEVDNEKTCVACLEEI----LQPCVLQCGHIFCHQCCYGALKTVVH 608
Y +H +L++ + D +K C AC+ I CV QC F H+ C G + + H
Sbjct: 283 YFCHEHHLKLEKYDSVRDAKKQCQACILRIDSYDFYNCV-QC-DFFLHEVCAGLPRKLAH 340
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +3
Query: 441 YLAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCG--HIFCHQCCYGALKTVVH 608
+ KH +LK D EK C AC+ I+ C + H+ C G + + H
Sbjct: 307 HFCHKHRLKLKNHDGARDTEKQCRACIYPIVSHQFYHCKKCNYSLHEVCAGLSRKLDH 364
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,631
Number of Sequences: 28952
Number of extensions: 261046
Number of successful extensions: 909
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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