Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1261
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    27   0.10 
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    23   3.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.0  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 486 HDYIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSIREPKFNF 611
           H    E CNL  C  +N ++Y F  F FV+ T+SI   +F +
Sbjct: 215 HGVHNELCNL--CQVAN-SIYGFQNFLFVLSTFSICITQFYY 253


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 1   GIMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKT 165
           G + T++  V  ++L +  T  + + + ++  DC+ +     +   KLK G  +T
Sbjct: 11  GALLTYVSSVEYLILREIDTILKNDQMTRNYLDCVLDKGKCTKEAEKLKKGITET 65


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 528 YSNFNLYLFGKFCFVIIT 581
           YSNF+++LF     V +T
Sbjct: 70  YSNFSVFLFDIITIVTLT 87


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -3

Query: 197 HRAYFFNGSFSVLKSPVFSLFTSCSSAFVSARQSALCFFKFS 72
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -3

Query: 197 HRAYFFNGSFSVLKSPVFSLFTSCSSAFVSARQSALCFFKFS 72
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 337 PHQTAWNYVKCYHEKDPKHALFL*IHNPTQPFHT 438
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,114
Number of Sequences: 336
Number of extensions: 3245
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)