BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1261 (664 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 28 1.4 SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 4.2 SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.6 SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 7.4 SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7 >SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 27.9 bits (59), Expect = 1.4 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%) Frame = +1 Query: 154 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPN------AEDKLKVEKLIDA- 312 DF EN+ + +L + + ++ KDG + +D+ + N A +K K E DA Sbjct: 84 DFMDENKENGRISLGLSVIVRVTIKDGAYHEDIGYGSIDNCRGKASAFEKCKKEGTTDAL 143 Query: 313 --CLANKGNS 336 L N GNS Sbjct: 144 KRALRNFGNS 153 >SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 331 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 525 YYSNFNLYLFGKFCFVIITYSIREPKFNFLLCCIIALV 638 Y+S LFG +C +I+ + + LLC II ++ Sbjct: 171 YFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVI 208 >SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 629 Score = 25.8 bits (54), Expect = 5.6 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +1 Query: 4 IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGD-FKTENEPL 180 I+ TF++FVV ++L + L ++ K+ + + + E KL GD F+ P+ Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329 >SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 25.4 bits (53), Expect = 7.4 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = +1 Query: 40 VLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYA 192 V + +TD N+ + L E + + ++K KT DFK + + YA Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671 >SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 25.0 bits (52), Expect = 9.7 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = -3 Query: 326 LLARQASISFSTFNLSSALGTLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPV 147 LL Q +S S F++S + SFL+FP ++S L + + SFS L SP Sbjct: 159 LLYHQIILSHSLFHISHLISFHFLFFSFLSFP--LLSFILFPCFSLFLSSNSFS-LASPF 215 Query: 146 FS 141 S Sbjct: 216 SS 217 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,660,584 Number of Sequences: 5004 Number of extensions: 54990 Number of successful extensions: 167 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 167 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 301829700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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