Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1261
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.16 
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   7.8  
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                28   7.8  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   7.8  

>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 181 SMVRFQS*SRLSSVCSPVVHQLSSRRDSRLCVSSSSPSAHL*GPEPGQ 38
           S +  +S S  SSVC  V+H+LS+ R   +C S     A+   P  GQ
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAPLDGQ 477


>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 405
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 429 VPYLISVK*LARTCLSRRCHDYIGEYCNLVWCYYSNFNLYLFGKFCFVI-----ITYSIR 593
           +P +I+    + +   RR   Y  E+  L W     F+ YL+G+   VI     +TY + 
Sbjct: 631 IPRVIAYGSRSLSAAERRYCAYRREFLALKWAVTEQFHDYLYGRQFHVITDSNPLTYLLT 690

Query: 594 EPKFNFLLCCIIALVISFD 650
             K +    C ++ + SFD
Sbjct: 691 SAKLSASGYCWLSALSSFD 709


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -2

Query: 396 SVLRVFLVVAFHVIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 217
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 216 LR 211
           ++
Sbjct: 84  IK 85


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = -1

Query: 655 ETSNEITKAMMQHKRKLNFGSRIEYV------IITKQNL 557
           E +NE  K  ++ KR+LNFGS I+YV       I+KQNL
Sbjct: 19  ENANEHDKKPLKAKRRLNFGS-IDYVKRKKKRKISKQNL 56


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 217 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 345
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 489 DYIGEYCNLVWCYYS-NFNLYLFGKFCFVIITYSIREPKFNFLLCCIIALV 638
           D + EY +L W   S  F  +LFG   F I++      K  F+  C++  V
Sbjct: 84  DLVCEYSSLSWATNSIMFTGWLFGNIVFGILSDKYGRRKVLFISSCMVCWV 134


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 129 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 16
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,657
Number of Sequences: 59808
Number of extensions: 392151
Number of successful extensions: 1105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)