Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1261
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 34 0.078
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 34 0.078
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 34 0.078
CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical ... 31 0.96
AL132858-1|CAB60474.1| 325|Caenorhabditis elegans Hypothetical ... 29 2.9
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 28 5.1
U42843-7|AAA83598.2| 326|Caenorhabditis elegans Serpentine rece... 28 5.1
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 28 5.1
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF039042-3|AAP40513.1| 359|Caenorhabditis elegans Serpentine re... 28 6.8
AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical... 27 9.0
AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical... 27 9.0
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 34.3 bits (75), Expect = 0.078
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K++ +DKLK E
Sbjct: 7325 KDDKLKQEADAKLKKEKDDKLKHE 7348
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7981 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8036
Query: 226 KDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 8037 KDDNFKQEANAKLQKEKDDKLKQEK 8061
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7429 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7484
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K+D +DKLK E
Sbjct: 7485 KDDKLKQDADAKLQKEKDDKLKQE 7508
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L K +++ LK A L K
Sbjct: 7525 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7580
Query: 226 KDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 7581 KDDNFKQEANAKLQKEKDDKLKQEK 7605
Score = 31.1 bits (67), Expect = 0.73
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + + D++L + K +++ LK+ A L K +
Sbjct: 8213 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8272
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 8273 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8301
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++ ++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7189 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7244
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K+D +DKLK E
Sbjct: 7245 KDDKLKQDADAKLQKEKDDKLKQE 7268
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + + D++L ++ K +++ K+ A L K +
Sbjct: 7541 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7600
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 7601 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7629
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K D + D++L + K +++ LK+ A L K +
Sbjct: 7773 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7832
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 7833 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7861
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + D++L + K +++ LK+ A L K +
Sbjct: 8229 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8288
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 8289 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8317
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 34.3 bits (75), Expect = 0.078
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K++ +DKLK E
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLKHE 7368
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 8001 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8056
Query: 226 KDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 8057 KDDNFKQEANAKLQKEKDDKLKQEK 8081
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7449 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7504
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K+D +DKLK E
Sbjct: 7505 KDDKLKQDADAKLQKEKDDKLKQE 7528
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L K +++ LK A L K
Sbjct: 7545 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7600
Query: 226 KDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 7601 KDDNFKQEANAKLQKEKDDKLKQEK 7625
Score = 31.1 bits (67), Expect = 0.73
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + + D++L + K +++ LK+ A L K +
Sbjct: 8233 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8292
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 8293 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8321
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++ ++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7209 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7264
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K+D +DKLK E
Sbjct: 7265 KDDKLKQDADAKLQKEKDDKLKQE 7288
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + + D++L ++ K +++ K+ A L K +
Sbjct: 7561 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7620
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 7621 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7649
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K D + D++L + K +++ LK+ A L K +
Sbjct: 7793 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7852
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 7853 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7881
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + D++L + K +++ LK+ A L K +
Sbjct: 8249 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8308
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 8309 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8337
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 34.3 bits (75), Expect = 0.078
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K++ +DKLK E
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLKHE 7368
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 8001 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8056
Query: 226 KDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 8057 KDDNFKQEANAKLQKEKDDKLKQEK 8081
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7449 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7504
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K+D +DKLK E
Sbjct: 7505 KDDKLKQDADAKLQKEKDDKLKQE 7528
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++K++ K AD + + D++L K +++ LK A L K
Sbjct: 7545 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7600
Query: 226 KDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 7601 KDDNFKQEANAKLQKEKDDKLKQEK 7625
Score = 31.1 bits (67), Expect = 0.73
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + + D++L + K +++ LK+ A L K +
Sbjct: 8233 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8292
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 8293 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8321
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 225
A A ++ ++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7209 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7264
Query: 226 KDGKFKKDVALAKVPNAEDKLKVE 297
KD K K+D +DKLK E
Sbjct: 7265 KDDKLKQDADAKLQKEKDDKLKQE 7288
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + + D++L ++ K +++ K+ A L K +
Sbjct: 7561 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7620
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
KD FK++ +DKLK EK
Sbjct: 7621 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7649
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K D + D++L + K +++ LK+ A L K +
Sbjct: 7793 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7852
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 7853 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7881
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 46 AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 216
A A ++K++ K AD + D++L + K +++ LK+ A L K +
Sbjct: 8249 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8308
Query: 217 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 300
DGK KK+ A+ KLK EK
Sbjct: 8309 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8337
>CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical
protein C42C1.1 protein.
Length = 347
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 477 RRCHD-YIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSIREPKFNFLLCCIIALVISFDV 653
R C Y G+YC L Y + N++ + F F+ SI F +LC ++ LV SF++
Sbjct: 192 RACQQSYNGKYC-LAERYQISDNIHFY--FFFIRFASSIF---FFTILCPVLMLVASFEI 245
Query: 654 SW 659
W
Sbjct: 246 DW 247
>AL132858-1|CAB60474.1| 325|Caenorhabditis elegans Hypothetical
protein Y113G7A.1 protein.
Length = 325
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 508 AILYGVIILTLIYICSVNFVLLL*HIQSENQ---NLIFFCVA 624
A++ + T ++I VN V+ + +I +NQ NLI FC+A
Sbjct: 237 ALILQASVNTFLFIVPVNAVIYIVYIHHQNQLLNNLIVFCLA 278
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 139 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 303
+L +++ PL+ +C+ I + TKD K K L+K+ N +DK+ V +L
Sbjct: 61 RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119
Query: 304 -IDACLANK 327
I+A L NK
Sbjct: 120 EIEARLENK 128
>U42843-7|AAA83598.2| 326|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 5 protein.
Length = 326
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 445 VLNS*LGHVYLDDVMIISENIAILYGVIILTLIYICSVNFVLLL*HIQSENQNLIFFCVA 624
VLNS L HV + + +I+ +T + IC VNF+L + + E + +IF
Sbjct: 18 VLNSMLCHVAAWKSPTVIKTYSIITVNFAITNLTICGVNFILQMRMVPIE-KTMIFVSYG 76
Query: 625 S*LWLS 642
WL+
Sbjct: 77 PCQWLT 82
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 233 PSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSCSSAFVS 108
P ++S L S +N + +VLK+ + L+ SC++ FVS
Sbjct: 14 PFYLLSLCLFSTMYILIYNFTTNVLKAMRYFLYASCTATFVS 55
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 160 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 300
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 160 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 300
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>AF039042-3|AAP40513.1| 359|Caenorhabditis elegans Serpentine
receptor, class w protein101 protein.
Length = 359
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -3
Query: 290 FNLSSALGTLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSCSSAFV 111
+ LS+ L L +FL+ L LISI + +F G ++ ++ + + FV
Sbjct: 265 YGLSTKLIGLMTVAAFLSETPL----GLISIFKQFFTKGDINIRLLTDLVIYFTILATFV 320
Query: 110 SARQSALCFFKFS-FCSSVR 54
S LC S +C ++R
Sbjct: 321 SILHPVLCLLMSSKYCETLR 340
>AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical
protein K12H6.6b protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 266 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSC 126
T R T LN +LV+ +++++ YF SFS+ SP + T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246
>AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical
protein K12H6.6a protein.
Length = 309
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 266 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSC 126
T R T LN +LV+ +++++ YF SFS+ SP + T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,994
Number of Sequences: 27780
Number of extensions: 308083
Number of successful extensions: 945
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -