Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.43 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   5.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.9  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.2  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 422 VRDGASGHHEDGRPPTTTSTPR 487
           + DG SG ++   P +++STPR
Sbjct: 411 IDDGGSGQNQPESPESSSSTPR 432


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 432 PSRTDSCPPAARGFPPCSC 376
           P+R   C PA    P C C
Sbjct: 157 PNRAPPCDPAVCVLPDCFC 175


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 540 DDVSVWATVFSSSCWVFALGVEVVVGGRPSSW 445
           D  + W T +    WV     E+V+GG    W
Sbjct: 482 DPYTPWHTFYDYRPWVQHGHQELVLGGEVCLW 513


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = +3

Query: 345 LGTGEVTFSTHTNKAESLEPLEGKSPYVTARAVTTRT 455
           LGT   T S     +  L P+    PY     +T  T
Sbjct: 462 LGTNIYTSSKRQRTSPQLSPMSSLPPYPNRTQITEVT 498


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -2

Query: 432 PSRTDSCPPAARGFPPCSC 376
           P+R   C P     P C C
Sbjct: 156 PNRAPDCDPTQCVLPDCFC 174


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 18  NYTIEKETQDLPANID 65
           +Y+ E E  DLP NID
Sbjct: 76  DYSSEYEKCDLPFNID 91


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 428 DGASGHHEDGRPPTTTSTPRAK 493
           DG +GHH    P    +T   K
Sbjct: 214 DGVTGHHSGLYPSAVDTTTNQK 235


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 TNPKPSQSTRRANTSGTRAT 189
           T PKP Q     +TS T+ T
Sbjct: 429 TTPKPGQWVPEKSTSTTQRT 448


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,929
Number of Sequences: 336
Number of extensions: 2039
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)