BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1260 (541 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.8 SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.1 SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 26 4.1 SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 5.4 SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 25 5.4 SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 7.2 SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 25 9.5 >SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sfc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1339 Score = 27.1 bits (57), Expect = 1.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +3 Query: 375 HTNKAESLEPLEGKSPYVTARAVTTRTGDH 464 H KAE LEPL S V ++ T + DH Sbjct: 570 HVKKAEHLEPLLNVSSSVPSKNFTVSSPDH 599 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 25.8 bits (54), Expect = 4.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 339 ENLGTGEVTFSTHTNKAESLEPLEGKSPYVTARAVTTR 452 EN G G V FST + +L L G+ + +AVT R Sbjct: 132 ENPGAGVVEFSTEEDMRNALTSLNGE--VIKGQAVTLR 167 >SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 399 Score = 25.8 bits (54), Expect = 4.1 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 103 VKTKVHKEATNPKPSQSTRRANTSGTRATCL 195 +K H E N K S T ++N+S TCL Sbjct: 191 IKETQHNEMGNIKLSSQTAKSNSSTQTKTCL 221 >SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr 3|||Manual Length = 862 Score = 25.4 bits (53), Expect = 5.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 457 PVLVVTARAVTYGLLPSSGSRLSALFV*VE 368 P+ V R +T G++ SSGS A+F +E Sbjct: 464 PIAVQFMRGITVGVIGSSGSAQLAIFFILE 493 >SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 456 Score = 25.4 bits (53), Expect = 5.4 Identities = 20/60 (33%), Positives = 24/60 (40%) Frame = +3 Query: 51 PANIDIQTVNTHKFSTFGKDESPQRGDEPKTFTEYTTSEHIRHQGYVSSNTPLSSKIPVS 230 P I+ T F DES R +PK TS G SS+ SSKI V+ Sbjct: 381 PLGIEGPTNMWSPFHDGDDDESTSRRPKPKNKPSNVTSTTSYTSGMTSSSESGSSKIGVA 440 >SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Schizosaccharomyces pombe|chr 1|||Manual Length = 380 Score = 25.0 bits (52), Expect = 7.2 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = +3 Query: 54 ANIDIQTVN-THKFSTFGKDESPQRGDEPKTFTEYTTSEHIRHQGYVSSN 200 ANI +V TH +S E P + K TE + R QG+V N Sbjct: 221 ANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKN 270 >SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 467 Score = 24.6 bits (51), Expect = 9.5 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +1 Query: 466 HHDLDTKGEDPAARGEDGGPHAHVI 540 ++DL+ K G GGPH H I Sbjct: 270 YYDLEDKINFSVFPGHQGGPHNHTI 294 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,870,987 Number of Sequences: 5004 Number of extensions: 33894 Number of successful extensions: 116 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 221892220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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