Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   4.1  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   4.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.4  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   5.4  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   7.2  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   9.5  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 375 HTNKAESLEPLEGKSPYVTARAVTTRTGDH 464
           H  KAE LEPL   S  V ++  T  + DH
Sbjct: 570 HVKKAEHLEPLLNVSSSVPSKNFTVSSPDH 599


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 339 ENLGTGEVTFSTHTNKAESLEPLEGKSPYVTARAVTTR 452
           EN G G V FST  +   +L  L G+   +  +AVT R
Sbjct: 132 ENPGAGVVEFSTEEDMRNALTSLNGE--VIKGQAVTLR 167


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 103 VKTKVHKEATNPKPSQSTRRANTSGTRATCL 195
           +K   H E  N K S  T ++N+S    TCL
Sbjct: 191 IKETQHNEMGNIKLSSQTAKSNSSTQTKTCL 221


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 457 PVLVVTARAVTYGLLPSSGSRLSALFV*VE 368
           P+ V   R +T G++ SSGS   A+F  +E
Sbjct: 464 PIAVQFMRGITVGVIGSSGSAQLAIFFILE 493


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 51  PANIDIQTVNTHKFSTFGKDESPQRGDEPKTFTEYTTSEHIRHQGYVSSNTPLSSKIPVS 230
           P  I+  T     F     DES  R  +PK      TS      G  SS+   SSKI V+
Sbjct: 381 PLGIEGPTNMWSPFHDGDDDESTSRRPKPKNKPSNVTSTTSYTSGMTSSSESGSSKIGVA 440


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 54  ANIDIQTVN-THKFSTFGKDESPQRGDEPKTFTEYTTSEHIRHQGYVSSN 200
           ANI   +V  TH +S     E P    + K  TE     + R QG+V  N
Sbjct: 221 ANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKN 270


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 466 HHDLDTKGEDPAARGEDGGPHAHVI 540
           ++DL+ K       G  GGPH H I
Sbjct: 270 YYDLEDKINFSVFPGHQGGPHNHTI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,987
Number of Sequences: 5004
Number of extensions: 33894
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)