Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1260
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 31 0.59
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 30 1.0
03_04_0017 - 16468486-16468505,16468597-16468807,16469522-164702... 30 1.4
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 1.8
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 29 2.4
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 28 4.1
05_03_0215 + 10347431-10348831 28 5.5
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 7.2
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 9.6
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 27 9.6
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 27 9.6
05_01_0214 - 1615519-1616775 27 9.6
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 31.1 bits (67), Expect = 0.59
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 EDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFGKDESPQRGDEPKTFTEYTTSEHIRHQ 182
ED+ ++TI+KE P N + T N KF G + D+ K + + +
Sbjct: 201 EDRKDDHTIDKEDLKKPLNSLVDTANRTKFFRSGPKGQAAKEDKIKNSIKLLAEDDTEDK 260
Query: 183 GYVSSN--TPLSSKIPVSQ 233
V+ P S+K+ V +
Sbjct: 261 LVVTGRKVMPCSNKLKVKE 279
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = +2
Query: 365 LLHSHEQGGKPRAA------GGQE-SVRDGASGHHEDGRPPTTTSTPRAKTQQLEEKTVA 523
++H HE P +A G QE SV D A GH + P+A +EE +V
Sbjct: 144 IIHMHEGAPAPPSAHVVDEEGRQEVSVEDDADGHQRSKCTDGVPAAPQASAADVEEDSVH 203
Query: 524 H 526
H
Sbjct: 204 H 204
>03_04_0017 -
16468486-16468505,16468597-16468807,16469522-16470214,
16470338-16470398,16470624-16470706
Length = 355
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 72 TVNTHKFS--TFGKDESPQRGDEPKTFTEYTTSE 167
T TH FS T G DE P++G+E + E++ E
Sbjct: 107 TPATHLFSIGTLGNDELPEQGEEEEDLPEFSVEE 140
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 438 LAPSRTDSCPPAARGFPPCSCEW 370
L S D+ PP + G PP CEW
Sbjct: 166 LMTSTGDNQPPISSGMPPSPCEW 188
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 371 HSHEQGGKPRAAGGQESVRDGASGHHEDGRPP 466
H GG+ + GG R G HH G PP
Sbjct: 129 HGGRGGGQYQGRGGHYQGRGGQGSHHPGGGPP 160
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 383 QGGKPRAAGGQESVRDGASGHHEDGRPPTTTSTPRAKTQQLEEK 514
QGG PR +S G + R TTT ++ + +EEK
Sbjct: 121 QGGSPRRTVPAQSAPGGPATAQSSPRAATTTKLDKSVSNNIEEK 164
>05_03_0215 + 10347431-10348831
Length = 466
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 420 DSCPPAARGFPPCSCEW 370
D+ PP + G PPC EW
Sbjct: 373 DNQPPRSSGVPPCPSEW 389
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 194 RHVALVPDVFARRVLCEGF 138
R LVPD+F R +L +GF
Sbjct: 603 RQSGLVPDIFTRNILIDGF 621
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 401 AAGGQESVRDGA--SGHHEDGRPPTTTSTPRAKTQ 499
+ G E V D + + H+D PPT + P +TQ
Sbjct: 3233 STSGSEKVLDASILTATHDDAHPPTVRNLPEHETQ 3267
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 371 HSHEQGGKPRAAGGQESVRDGASGHHED-GRPPTTTSTPRAKTQQLEEKTVAHTLTSS 541
H H Q P +GG + GHH D PP+TTS+ + + + T SS
Sbjct: 14 HHHHQ--TPAGSGGGGA----GDGHHRDFSSPPSTTSSSSSSSSSSSTNSPTATAASS 65
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 443 HHEDGRPPTTTSTP---RAKTQQLEEKTVA 523
HH+ +PP T +TP AK Q EKT A
Sbjct: 34 HHQPQQPPMTPTTPLPEAAKPPQNPEKTAA 63
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 371 HSHEQGGKPRAAGGQESVRDGASGHHEDGRPPTTT 475
H H+ GG E G HHEDG + T
Sbjct: 198 HDHDHGGSDHDHHHHEDQEHGHVHHHEDGHGNSIT 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,393
Number of Sequences: 37544
Number of extensions: 264752
Number of successful extensions: 1142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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