Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1260
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2) 33 0.11
SB_14944| Best HMM Match : HR1 (HMM E-Value=0.19) 32 0.34
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 30 1.4
SB_27023| Best HMM Match : IncA (HMM E-Value=0.55) 29 1.8
SB_17301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0) 28 4.2
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 28 5.6
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_15480| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_42499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07) 27 9.8
SB_35062| Best HMM Match : IATP (HMM E-Value=1.7) 27 9.8
SB_14104| Best HMM Match : GDA1_CD39 (HMM E-Value=0.016) 27 9.8
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
Length = 1167
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +3
Query: 3 EDK-SGNYTIEKETQDLPANIDIQTVNTHKFSTFGK-DESPQRGDE----PKTFTEYTTS 164
EDK G+ + + DLPA + ++ + + GK +ES DE P+ F EY
Sbjct: 313 EDKVEGDVVAQDKQDDLPAEVAVEVPQEGEDAADGKVEESNVTKDEDVAKPEAFVEYEED 372
Query: 165 EHIRHQGYVSSNTPLSSKIPVSQ 233
E + Y S N P K P+ +
Sbjct: 373 EELPWAMYRSLNPP-QGKTPIEE 394
>SB_14944| Best HMM Match : HR1 (HMM E-Value=0.19)
Length = 373
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -3
Query: 467 WVVARPRGDRSRRHV-RTLA--LQRLEAFRLVRVSGEGDLAGAQVLHL 333
W A PRG R+RR++ R L+ L AF VRV GEG +A + ++
Sbjct: 17 WYRAPPRGRRTRRYIFRKLSDCTAILIAFNEVRVGGEGRVAELETTYI 64
>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 93 STFGKDESPQRGDEPKTFTEYTTSEHIRHQGYVSSNTPLS 212
ST + E P+ EPK+F T+E + HQ YV +T +S
Sbjct: 953 STQTEAEFPENTQEPKSFCGTRTTEAVTHQ-YVKKSTIIS 991
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 407 GGQESVRDGASGHHEDGRPPTTTSTPRAKTQQLEEKTVAHTLTSS 541
GG G G GRP TTT+T R TQ+ + H S+
Sbjct: 520 GGGGGGGGGGRGGRGRGRPTTTTTTRRCVTQKTQRADGTHVTRSN 564
>SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)
Length = 933
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 485 LVSRSWWVVARPRGD-RSRRHVRTLALQRLE 396
L ++ WWV+++ RG RSRR R L+R +
Sbjct: 193 LGAQDWWVISQKRGPIRSRRPTRGKVLERFD 223
>SB_17301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 485 LVSRSWWVVARPRGD-RSRRHVRTLALQRLE 396
L ++ WWV+++ RG RSRR R L+R +
Sbjct: 173 LGAQDWWVISQKRGPIRSRRPTRGKVLERFD 203
>SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)
Length = 835
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 374 SHEQGGKPRAAGGQESVRDGASGHHEDGRPPT----TTSTPRAKTQQLEE 511
S E GG A E+V D + H+ G T T PR KTQ++EE
Sbjct: 650 SIEYGGLECAVEIVENVEDAIAHIHKFGSSHTESIITNDAPRGKTQEMEE 699
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 66 CQCSPVGLASPSLSCSCRFCL 4
CQC P G +S + SC+ CL
Sbjct: 1545 CQCCPNGYSSTHMKTSCKPCL 1565
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 118 HKEATNPKPSQSTRRANTSGT 180
HKE+T P P +S R TS T
Sbjct: 198 HKESTTPSPKKSEREKKTSPT 218
>SB_15480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 112 KVHKEATNPKPSQSTRRANTSGTRATCLPTLLYPL 216
K+HK PKP Q T R R C + +P+
Sbjct: 57 KIHKAPYLPKPPQCTWRIRWRSNRKNCCCLVFWPV 91
>SB_42499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 103 VKTKVHKEATNPKPSQSTRRANTSGTRATCL----PTLLYPLRSP 225
++ VH+ A N +PS+ T NTS P L PLR P
Sbjct: 119 IQEVVHQVAHNSRPSEVTVVTNTSAISVMATTGEGPVLFVPLREP 163
>SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07)
Length = 279
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +3
Query: 285 QLLTKNEEGVTHNVEQEVENLGTGEVTFSTHTNKAESLEPLEGKSPYVT 431
+L T + TH V Q L T +STHT E PY T
Sbjct: 84 ELATSTYQYSTHTVPQVQRELATSTYQYSTHTVPPVQRELATSTYPYRT 132
>SB_35062| Best HMM Match : IATP (HMM E-Value=1.7)
Length = 223
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 291 LTKNEEGVTHNVEQEVENLGTGEVTFSTHTNKAESLEPLEGKSPYVTARAVTTRT 455
L KN G H+V EV+N+G H ++ EP K ++ RT
Sbjct: 15 LKKNANGGIHHVCIEVKNIGEAVKDLKAHNVRSLDPEPKYTKPDWLKPTTCRKRT 69
>SB_14104| Best HMM Match : GDA1_CD39 (HMM E-Value=0.016)
Length = 197
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 6 DKSGNYTIEKETQDLPANIDIQTVNTHKFSTFGKDESPQ 122
DK ++ D+P N D Q ++H GK E P+
Sbjct: 128 DKQQEAILDDLRTDIPKNYDFQFTSSHAEVITGKQEDPK 166
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 118 HKEATNP-KPSQSTRRANTSGTRATCLPTLLYPLRSP 225
HK+ T P +P+Q ++ + G R T LPT P P
Sbjct: 1049 HKKGTAPLEPTQESKENSNIGERPTNLPTHTSPELKP 1085
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,506
Number of Sequences: 59808
Number of extensions: 287880
Number of successful extensions: 1211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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